BAC Information

Click to search

BAC

Clone NameMSMg01-117A11
Chromosome16 (Build37)
Map Location 16,461,660 - 16,461,839
singlet/doubletsinglet
Overlap geneFgd4
Upstream geneUbe2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743
Downstream geneOlfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117A11.T7 (MSMg01no117_a11.b1)MSMg01-117A11.TJ (MSMg01no117_a11.g1)
ACCAG328264AG328265
length742731
length of high quality
(start - end)
99 (81 - 179)183 (82 - 264)
definitionCHROMAT_FILE: MSMg01no117_a11.b1 PHD_FILE: MSMg01no117_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:27 2005CHROMAT_FILE: MSMg01no117_a11.g1 PHD_FILE: MSMg01no117_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGAGGGCGGATTCAGC
ATAGTTACCACTATATGGTTATTCAACATCAGCAGAAAAATTACTGTACG
TGCAGGGTGTCAGACTTCTGTGAGTTGTTGACTCAGTTCAGATAGCCTGT
TATGTCCTCACATTCCTCTTTATCTTTAAGGTTAATCTGTTCTCAGGAAT
GTTTTAGCTACGGGGCATACCCAGGTTTGTTTTTCTTTAATCTCAGCCCC
AGGCAGTCTCTAGGCTCACAAACAACTAGTAATTTCTGAGTACTTTATAT
GACTTACATGTCTTGTTTTTTCATCTTTCTTAGGCTTGGGGATAGAGGAT
GGAATATGGGACCCCCCTCCCGCCAGGTGCGGACACCAGTAAAGGGTATT
ACATTGATATGTTAATAACGAAAATATCCATTAAAAAAAAAAATAAAAAA
AGAACTCTTAAGTACATTATTTGCTATTATCACTTAAATTCCTGATTGCA
CGTGTTAGATAATGATTTGTCTTTTTACCATTTTCAACACAGAAGCGGGT
TCATATGTCCTCTGAGCTGCCTATTATATGCGGCTCCATAATTCTCCTCT
CTTGCCCCTTTTAAAGGGCTAGAATGCCATTTATTCTCACAATCTCTGTA
ATTATGTGAATAATTACTTGCCTCTCTGTTATGAAATATAAGTCCTATAC
CCAATATATGTATACTATTTTTTAAATTCCTAATTTTATTTC
GCTGTGGTAGCCTGGCGGCGCCTGGTTTTCTAAAAAGGTGACCTATAGAA
GGATTTCGAAATACTTGTGAATGGCTGAGATGCAGTCTGCCAACACCATA
GTACTCACTAAGAAGAGGTAGCGCTCTTGTGCTGATGTGTTCCGAGCTGC
TAGTTTGAGGATTTGTCCTTCTTTTATTAGTTCATTTGAGGGATTTACAA
TATCCTCTTCTTCTCCCAACATCTCATAAATTTCTAAAAGTTTCTTCAGG
TTCTCCTGGGATGTTAGAATATATTATATGAAGATCATATATAATAAGGT
AATTCAAATTTATCTTTATTCTGAATAATTTACTAGATATTGAGAGTGCT
GTTACATTTTGGTATACACCATCTCAATAAAGTGAGTCCTAAATAATATA
TATTCTTTTTCTTGCTCATCTGCATCTGATCATTATGGTTTAATTCTACT
ACATTGAAAGGCTAAACTATCAACTATTGTCCTAGCCGAAAGTTCCCAGA
TCTTGATAAGCCTCTTACCACTTTTCATTATGCACTATTTATAAGGCTTG
CTGCTGTAAATATTATTTCTAGTGACTTCCACATTCATATATATATTGTA
ATATTTGTTCGTACTTCTTTGCGCTCACTTACTTACACTTACTCTCGCCC
CCTGATACCCTTGTATGTTACTTCTGCTTCCCCCACAAGCGCTATACATA
GAATTCTTAGGATCTTGGCCTCCCGGTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_a11.g1 MSMg01no117_a11.g1 CHROMAT_FILE:
MSMg01no117_a11.g1 PHD_FILE: MSMg01no117_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:27 2005
         (183 letters)



>mm_chr16_16461460_16462042
          Length = 583

 Score =  348 bits (180), Expect = e-100
 Identities = 180/180 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcagtctgccaacaccatagtactcactaagaagaggtagcgctcttgtgctgatgtgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcagtctgccaacaccatagtactcactaagaagaggtagcgctcttgtgctgatgtgtt 260

                                                                       
Query: 61  ccgagctgctagtttgaggatttgtccttcttttattagttcatttgagggatttacaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccgagctgctagtttgaggatttgtccttcttttattagttcatttgagggatttacaat 320

                                                                       
Query: 121 atcctcttcttctcccaacatctcataaatttctaaaagtttcttcaggttctcctggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcctcttcttctcccaacatctcataaatttctaaaagtttcttcaggttctcctggga 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)