BAC Information

Click to search

BAC

Clone NameMSMg01-118D11
Chromosome16 (Build37)
Map Location 37,577,971 - 37,711,992
singlet/doubletdoublet
Overlap geneHgd, Ndufb4, LOC100043709
Upstream geneEG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l, Gtf2e1, Rabl3
Downstream geneFstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118D11.T7 (MSMg01no118_d11.b1)MSMg01-118D11.TJ (MSMg01no118_d11.g1)
ACCAG329149AG329150
length728703
length of high quality
(start - end)
190 (140 - 329)285 (67 - 351)
definitionCHROMAT_FILE: MSMg01no118_d11.b1 PHD_FILE: MSMg01no118_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:00 2005CHROMAT_FILE: MSMg01no118_d11.g1 PHD_FILE: MSMg01no118_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,577,971 - 37,578,160)(37,711,708 - 37,711,992)
sequence
NACTGTCTTGGACCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTC
CAAAAGAGGATCCGCGGAATTCCTTTTCCTGAAAAACTCTCTGTTTCAAG
TCTGCGTATTGTATAGTTAGCCTCAATAATATAGCCCCTCTCCATCCACT
ACTAAGTTTGTATATAAAACCCAGAGTTTATATGCCATATAATGCCATAT
ATCCGTGCACTGTGGTTCCCTGTAAGCTGCCTGCCAGAAATTAGTCCACG
AGTTTGTACGTACATCCCTTATTTCTATTAACATGCCCACAGGGCTGGCC
CTCCACGTGGAAAACCTCATTCACAAGCAAATTCTATTGCAGCGTAACTA
CAGTACAGTCCTGAGCTCTGATTGTTTTTTACCCCCACCACCTAAAGATA
TGAACTCAGATAGGCAGTCTGGATCCATTCCACAACAGAACATATAATTT
TTAGCTGTATGGCTAAATTATCTATATTGTTAACCAACCACTCCCAAATT
CATTATTGTATCGTATGCCATTCTGCTTCTTCCCAAGTCTTTCAGCCATC
GAGCTCGGCTGGGCCTACCCCATGGCTTCCTTTGGTCCCACCTTGCACCT
TTTACATGTCTGTACCCCTTTGTTACCTGTATTGCTCTCCTCCCCTCTTG
TCACACTACATAGGCTTTGCATTTGCTGCCCTGTTCTTTTTAACTTAGTT
CCACCTCTTTACCCATTATTCCTGACAT
CATTACAGTGGGAGGCCTGGCGGCCGCCCTACAAACAAAGTTAGGTGAAC
TATAGATTCCTCCGCGGAATTCCGTGGGTTGTTTCATACTGGATGTTGCT
ACTCTCTTATTCTTCTCTCTGAGGAGACTTGGTCTCTTTGCAGAACAATT
AATACCTCAATGGATCCTCACCACCAATCTATAAAAATTAATCTCTTCTT
CCCACCTGTTTGCCAAGACTATTTCAAGAGCCTCTTGGCCTGCAACTTGA
AAGAGGCTCTTACTTCACTTTCCTCTTTTCTAAATTGTTGTTTTCTACCC
TTAGGAAACTAATTTAGTGATGAACACTTAATAATAAATTAAGATGGAAA
GCATCTAAACTATTTTAGGTAGATTTTTTTTCCTGCAAAGTTTTTTCAGT
TAACCTTCCATCTCCCACTACCCAGAAAATTAAATTAAAAGGAATGTTTA
ATTCCCCAAGCAAGCTGGTCAATCCATATTTCAGTAGAAAACAAGACTAA
CATTTATGCTCATTAATCTGATCTTTCTCTAGAGAATTTACTCATTTGAT
TAATGTTTCTCACTCTTTCTCTCCCTCCCTCCCCTCTACCTTGTTAATCT
CTCCAATAACTTCTGTTTGTGGATGGCTTAACTTAAATGCCCTTATTTTG
AGAAAATTGTGACTATCAGATGGTCTCCATGCGAACTTGAAATCTACATC
ATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_d11.b1 MSMg01no118_d11.b1 CHROMAT_FILE:
MSMg01no118_d11.b1 PHD_FILE: MSMg01no118_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:00 2005
         (190 letters)



>mm_chr16_37577771_37578360
          Length = 590

 Score =  337 bits (174), Expect = 3e-97
 Identities = 186/190 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccatccactactaagtttgtatataaaacccagagtttatatgccatataatgccata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ctccatccactactaagtttgtatataaaacccagagtttatatgccatataatgtcata 260

                                                                       
Query: 61  tatccgtgcactgtggttccctgtaagctgcctgccagaaattagtccacgagtttgtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatccgtgcactgtggttccctgtaagctgcctgccagaaattagtccacgagtttgtac 320

                                                                       
Query: 121 gtacatcccttatttctattaacatgcccacagggctggccctccacgtggaaaacctca 180
           ||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 321 gtacatcccttatttctcttaacatgcccacggggctggccctccatgtggaaaacctca 380

                     
Query: 181 ttcacaagca 190
           ||||||||||
Sbjct: 381 ttcacaagca 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no118_d11.g1 MSMg01no118_d11.g1 CHROMAT_FILE:
MSMg01no118_d11.g1 PHD_FILE: MSMg01no118_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:00 2005
         (285 letters)



>mm_chr16_37711508_37712192
          Length = 685

 Score =  458 bits (237), Expect = e-133
 Identities = 273/285 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattccgtgggttgtttcatactggatgttgctactctcttattcttctctctgaggag 60
           |||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||
Sbjct: 485 gaattccgtgggttgtttcatattggatgttgctattctcttattcttctttctgaggag 426

                                                                       
Query: 61  acttggtctctttgcagaacaattaatacctcaatggatcctcaccaccaatctataaaa 120
           |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 425 acttggtctctttgcataacaattaatacctcaatggatccccaccaccaatctataaaa 366

                                                                       
Query: 121 attaatctcttcttcccacctgtttgccaagactatttcaagagcctcttggcctgcaac 180
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 365 attaatctctacttcccacctgtttgccaagactatttcaagagcctcttggcctggaac 306

                                                                       
Query: 181 ttgaaagaggctcttacttcactttcctcttttctaaattgttgttttctacccttagga 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttgaaagaggctcttaattcactttcctcttttctaaattgttgttttctacccttagga 246

                                                        
Query: 241 aactaatttagtgatgaacacttaataataaattaagatggaaag 285
           ||| ||   ||||||||||||||||||||||||||||||||||||
Sbjct: 245 aacaaacagagtgatgaacacttaataataaattaagatggaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)