BAC Information

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BAC

Clone NameMSMg01-119E13
Chromosome16 (Build37)
Map Location 57,673,205 - 57,673,441
singlet/doubletsinglet
Overlap geneCol8a1
Upstream geneAbi3bp, Tfg, Gpr128, Tmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c, 2610528E23Rik, 4631422O05Rik
Downstream geneLOC435480, LOC629342, LOC100043477, Dcbld2, St3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119E13.T7 (MSMg01no119_e13.b1)MSMg01-119E13.TJ (MSMg01no119_e13.g1)
ACCAG329941AG329942
length730725
length of high quality
(start - end)
121 (45 - 165)258 (119 - 376)
definitionCHROMAT_FILE: MSMg01no119_e13.b1 PHD_FILE: MSMg01no119_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:23 2005CHROMAT_FILE: MSMg01no119_e13.g1 PHD_FILE: MSMg01no119_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAA
TTCACAACAGATTACCGCCAAATACCCAAAAAGCACTTAAATAAATGCTC
AAAGTCCTTAGTCATCAGGGAAATGCAAATTAAAATAACCCTGAGATTCC
ACCTTATACCAATCAGTATGGCTAAGATCAAAACCTTACGTGACAGCACA
TGCTGTTGAGTATGTGTAGAAAGGGGAAAGTTACTCTACTGCTGGCAGGA
TTGCAACCACTCTGGAAAACAACCTATAAGCTCCTCAGAAAATTGGTAAT
AGATCTACCTGACGACCCAGCTATACTCACTCTTGGGCATATACCCAAAA
GATGTCCCACCATACCACAGGGACTTGTGTTCCATTTTGCTCATAGCAAC
ATTATTTGTAATACCCAGATCTTGCAAATACCTAAGATGTCCCTCACACA
AGACAGCATAGAGAAAATGTGGCTCATTTACTCAATGAAACACTACTTAG
CTATTTAAAATGAGGACCTCCTCTGAGATCTTCTTTGATTTCTTCCTTTA
CAGACTTGAAGTTCCTATCCTACATATCCCTCACTTCCTCATTTACAGTC
ACGCCAACATATCCCTACATTACCCTGTGACTATTGCCAATGTCGCGCTT
TCCTTAACCTCTCTCTCCCTCTGTTCATTCTTTGCGCAAAGAACGCCCAC
TGGCCCCGTTTAGCTTTTTTTTTTTCCCGC
CATGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTCACCCAGACAGAGCTGAGCTGGCTGTTGT
TAACAGTTTTTGTTTGTTTGTTTTATTTTATTCTGGGTAAGCATTAAGAA
TGTGACAACCTGTAACACATTCTATTTGAAAATCTAAAATATGTATTTTT
TTGCACGTTATTCCTTGGTTCATTTGATCTAGAAAATATTTATTCCTTCC
TCTTCCCCCCTCCTGCCCCCAATTAGGAAACTAAACCGTTTACTCTAAAT
ATGGCTTCTTTCTTTCTTTCTTTCTTTCCTTCCCTCTTTCTTTCTTTCTT
TCTTTCTTTCCTTCCTTCTTCCTTTCTTTCTTTCCCTCTTTCTCTCTTTC
TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT
CCCCTCTTTCTTTCTTTCCCCCTCCCTTTCATTCCCTGTTCTTCCTTCAC
GCATATTATTATTGCTCTCTGAAACATACCTGCAAAGTCTTCTATTAACC
CTATACTGAACATCTTTACACTATGACCCTTCCTTCCCATTTTTCCTTTT
TCCCCCGCCTTCCCACACTTGTTTTTTTTGTTTTTCCCCTGTCCGTCCCG
CCAACTCCCTCCGTTTACCCGCTTTTTCCCTACATTCACATACTCGTCCT
GCTCCTGCCTCTTTATTGCTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_e13.g1 MSMg01no119_e13.g1 CHROMAT_FILE:
MSMg01no119_e13.g1 PHD_FILE: MSMg01no119_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:23 2005
         (258 letters)



>mm_chr16_57673005_57673664
          Length = 660

 Score =  383 bits (198), Expect = e-111
 Identities = 230/242 (95%), Gaps = 8/242 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttttattttattctgggtaagcattaagaatgtgacaacctgtaacacattctatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttttattttattctgggtaagcattaagaatgtgacaacctgtaacacattctatttg 260

                                                                       
Query: 61  aaaatctaaaatatgtattttttt-gcacgttattccttggttcatttgatctagaaaat 119
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatctaaaatatgtattttttttgcacgttattccttggttcatttgatctagaaaat 320

                                                                       
Query: 120 atttattccttcctcttcccccc-tcctgcccccaattaggaaactaaaccgtttactct 178
           || |||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||
Sbjct: 321 atctattccttcctcttccccccctcctgcccccaattaggaaaccaaacagtttactct 380

                                                                       
Query: 179 aaatatggcttctttctttc-tttctttctttccttccctctttctttctttctttcttt 237
           |||||||| |||||| |||| |||||||||||| ||   |||||||||||||||||||||
Sbjct: 381 aaatatggtttcttt-tttcctttctttctttc-tt---tctttctttctttctttcttt 435

             
Query: 238 ct 239
           ||
Sbjct: 436 ct 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 660
Length adjustment: 9
Effective length of query: 249
Effective length of database: 651
Effective search space:   162099
Effective search space used:   162099
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)