BAC Information

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BAC

Clone NameMSMg01-119H11
Chromosome16 (Build37)
Map Location 94,742,857 - 94,743,100
singlet/doubletsinglet
Overlap geneDscr3
Upstream geneDopey2, Morc3, Chaf1b, Cldn14, Sim2, Hlcs, LOC622832, LOC100040857, Dscr6, LOC545178, Pigp, Ttc3
Downstream geneDyrk1a, Kcnj6, LOC666201, Kcnj15, Erg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119H11.T7 (MSMg01no119_h11.b1)MSMg01-119H11.TJ (MSMg01no119_h11.g1)
ACCAG330077AG330078
length708707
length of high quality
(start - end)
243 (69 - 311)415 (69 - 483)
definitionCHROMAT_FILE: MSMg01no119_h11.b1 PHD_FILE: MSMg01no119_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:37 2005CHROMAT_FILE: MSMg01no119_h11.g1 PHD_FILE: MSMg01no119_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACAATTTGCGGCGCTAAACGATCACTATTTCGAATGGAGGGCGGAATTA
GGATGTTTCTACATAAATGTGAAGCATGTTCTCATGAAAGTGACACCACT
GAGTATTAGGGTTGTGAAATACAACAGAAATAAACTAGCATAGGCAGGTT
ACTATGACAAGGGACTTCTGTGGCATGGGCTGATTACTGTTATCTACCCA
CCGACCCCCAAACCCTCAGAACTCTTCTGTCATTTTGTCTTATATGGTGT
GGATAGAACTTCTTCAAAAATAAAGATAAACCTTATACACAGTAGCTCAT
AATTTATAAGGTATTTTTTTTATAACTGAACTGCTATTTTAAAAGTGAAA
GCATATGGCTGGAGAGGTGGCTCAGAGGTTCATAGTACTGCCTGCTCTTG
CAGAGGATCCTGGTTTGATTCCCAGCATCTACATGGTAGTTTACTACCAG
TTCACAATTCCAGTCCCATGGGCTCCCATGCCTTCTTCTGACCTCCAAGG
TACCAGGTATGCACATGTAGCACAGGTATATATATAGGTAATACATACAT
TCACCGTTGATTAAAGATGCTCACCTTACTGCTCTAACTGTGTTTTCTAA
CACGGTCATAACCCTCCCCGTGCCCTTTGTTCTCTCTTTCACTTCTCTCC
CTTTATTCTCTACTCATATTCTCCTATTTTCACGCCGCCCCTTTCCCCTT
ACCACTTT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTTCCAGGGGACCACATCTTTCTCTGACTGT
GGTCAGGCACTAGGTACTCAGATGGTGCACAGACATGTGTAGCATGAATG
TATGCATAGACATATATTCATATACATAAAATAAATGAATCTTTTTTTTT
TAATTAAAAAAAAAGAACAGACAACATTGAGGGCTAGGAAGACGCTCAGT
GGAATACACAGTTCCCTAGAGGAACAGAACCTGTGGAAAGAACAAATGCC
ACAGGGTTTATTACAGCGAGTCACATCACACACCCAACATCTGTCCACAC
ACTGGGGAGGCTAAGAGCCCAGTAGTGCTCAGTCCACAGGGCTGAGGGCC
TCAGTACTCTTGTCTACACCTGAAGGCCTGTAGGATTGCTGAAGAAGCTG
TGTTCTCATGTTAGTGAACAGCACTAGTATTAGCATTGGTGGCGACAGTG
AGATACTACAAGTTGCCAGTTTGGCAGGAAGCAAGTAGAAAAAACAAACA
AGCAAACAAAAATAACAGCTTTTTCCTGGGTTCTTTTCATCTATTCATTT
ATTTATTTATTTATTCACCCATTTATTTACTTATTTATTTATTCATGGCT
GCCATGGTAATGCGATGCCCACGTTTACTAAGTGGCTTCTCATTTTACAT
AATCCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_h11.b1 MSMg01no119_h11.b1 CHROMAT_FILE:
MSMg01no119_h11.b1 PHD_FILE: MSMg01no119_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:37 2005
         (243 letters)



>mm_chr16_94742657_94743300
          Length = 644

 Score =  433 bits (224), Expect = e-126
 Identities = 239/244 (97%), Gaps = 1/244 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgaagcatgttctcatgaaagtgacaccactgagtattagggttgtgaaatacaacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtgaagcatgttctcatgaaagtgacaccactgagtattagggttgtgaaatacaacaga 385

                                                                       
Query: 61  aataaactagcataggcaggttactatgacaagggacttctgtggcatgggctgattact 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aataaactagcatagtcaggttactatgacaagggacttctgtggcatgggctgattact 325

                                                                       
Query: 121 gttatctacccaccgacccccaaaccctcagaactcttctgt-cattttgtcttatatgg 179
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 324 gttatctacccaccgacccccaaaccctcagaactcttctgtgcattttgtcttacatgg 265

                                                                       
Query: 180 tgtggatagaacttcttcaaaaataaagataaaccttatacacagtagctcataatttat 239
           |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 264 tgtggatataacttcttcaaaaataaagagaaaccttatacacagtagctcataatttat 205

               
Query: 240 aagg 243
           ||||
Sbjct: 204 aagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 644
Length adjustment: 9
Effective length of query: 234
Effective length of database: 635
Effective search space:   148590
Effective search space used:   148590
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)