BAC Information

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BAC

Clone NameMSMg01-119P07
Chromosome16 (Build37)
Map Location 18,200,652 - 18,201,174
singlet/doubletsinglet
Overlap genenone
Upstream geneUbe2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r
Downstream geneEG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119P07.T7 (MSMg01no119_p07.b1)MSMg01-119P07.TJ (MSMg01no119_p07.g1)
ACCAG330446AG330447
length694693
length of high quality
(start - end)
236 (46 - 281)522 (74 - 595)
definitionCHROMAT_FILE: MSMg01no119_p07.b1 PHD_FILE: MSMg01no119_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:15 2005CHROMAT_FILE: MSMg01no119_p07.g1 PHD_FILE: MSMg01no119_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCG
GAATTCAGGATCTCCGGAAGAGCAGCCAGCGCTCTTAACCACTGAGCCAT
CTCTCCTTACCCAAGTTTCATCTTTCTTTTTTTTTCTTTTTCTTTTTTTT
TTTTTTTTTTTTTTTTTTTTGGGTTTTTGAGACAGGGTTTCTCTGGATAT
CTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTAGCCTCA
AACTCAGAAATCTGCCTGCCTCTGCCTCTGGGATTTAAGGAGTGTGCCAC
CACACCCGGCAAGTTTTATTTTTCTTAATGCTGCATTTCCACATATATCC
AGAGCGGGCAAATTGGTATTTTCTTAACTTTATCTGGTCATTCCATCATG
TTGAGATTGAACCCACTTTATCCAACTAGTTAGACAATGGTTTGGCTGTT
CTGGCACTTCCTGTTTATACCAGGCTGGCCTCATACTCAGATATCTACCT
GTCTCTTACCCCTCTAGTTGCGGGATCAAATGCATGTCCCATCCTCTACC
TTGGCTTAGAAAGTACTTTTAAACGTGTTCCCCCTTGGTTTGGACCGACG
TCCCCCTTCTAACACCCCTGTCCGCTTTTTCAGACTTCCCGATTTCCCAT
CCCCTTTCTCAATGTTTGTCCCCCCCCCTTTCGCCTCGGCATTT
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTACCTTCTCCTAAATTAGCTTGCTG
TGTCTGGACAGGACACTGGGGTGCAAGGGGCCAAGCTGAACCAAAGATAG
GGACATAAGCAAGCAGGGGAAAACAGGACCCAGTGGTGTAACAATGAGGT
TTGCCTGCTCTGGGTGTGTGTCCACCCCAGCTTTGAGGTCCTAGTACAGA
CAGATCGAGGCTGGGCCCACAGCAAGCGCCATCCTGAAATAGACTCTGCT
TAGGACTCTCCTGCCTGGAGGGTGGGCACCCCAGTGTGGAAAGCCAAGGC
AGGGATCAAATACCTGCCAGAACAAAGGGAGGGCCTTCACAGGGGGTCAG
CCCTTGCTGACTAGGGACTCTGGGTTACAGACCAACCAGAACCATCTCTT
GGCTGGGCTCCTTAGGGCCAGAAGGGCCCAAAGGGCCAGAAGGGGCAACC
TGATCTCTGGCCACCACGCCCAGTGGGATGCTATGCCCCCAACCCCAGCC
AGCTTCCTGCACATAACCCAGCCTGAAGCTGCTGATTGATGAGGGACCCG
GGGCTCTGTAGTATGGCCCCTGTGCTTGCTGCTGCCCAATGGCCCCCTCC
CAGCCTCTGCAGCTCCTTCTAACCTCATAGTACCCCAAGGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_p07.g1 MSMg01no119_p07.g1 CHROMAT_FILE:
MSMg01no119_p07.g1 PHD_FILE: MSMg01no119_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:15 2005
         (522 letters)



>mm_chr16_18200452_18201374
          Length = 923

 Score =  982 bits (508), Expect = 0.0
 Identities = 520/524 (99%), Gaps = 3/524 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaccttctcctaa-attagcttgctgtgtctggacaggacactggggtgcaaggggcc 59
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaccttctcctaagattagcttgctgtgtctggacaggacactggggtgcaaggggcc 260

                                                                       
Query: 60  aagctgaaccaaagatagggacataagcaagcaggggaaaacaggacccagtggtgtaac 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagctgaaccaaagatagggacataagcaagcaggggaaaacaggacccagtggtgtaac 320

                                                                       
Query: 120 aatgaggtttgcctgctctgggtgtgtgtccaccccagctttgaggtcctagtacagaca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgaggtttgcctgctctgggtgtgtgtccaccccagctttgaggtcctagtacagaca 380

                                                                       
Query: 180 gatcgaggctgggcccacagcaagcgccatcctgaaatagactctgcttaggactctcct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatcgaggctgggcccacagcaagcgccatcctgaaatagactctgcttaggactctcct 440

                                                                       
Query: 240 gcctggagggtgggcaccccagtgtggaaagccaaggcagggatcaaatacctgccagaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctggagggtgggcaccccagtgtggaaagccaaggcagggatcaaatacctgccagaa 500

                                                                       
Query: 300 caaagggagggccttcacagggggtcagcccttgctgactagggactctgggttacagac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaagggagggccttcacagggggtcagcccttgctgactagggactctgggttacagac 560

                                                                       
Query: 360 caaccagaaccatctcttggctgggctccttagggccagaagggcccaaagggccagaag 419
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 caaccagaaccatctcttggctgggctccttggggccagaagggcccaaagggccagaag 620

                                                                       
Query: 420 gggcaacctgatctctggccaccacgcccagtgggatgctatgcccccaaccccagccag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggcaacctgatctctggccaccacgcccagtgggatgctatgcccccaaccccagccag 680

                                                       
Query: 480 cttcctgcacataacc-cagcctgaagctgctgattgatgaggg 522
           ||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 681 cttcctgcacata-ccgcagcctgaagctgctgattgatgaggg 723


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 923
Length adjustment: 10
Effective length of query: 512
Effective length of database: 913
Effective search space:   467456
Effective search space used:   467456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)