Query= MSMg01no120_c19.b1 MSMg01no120_c19.b1 CHROMAT_FILE:
MSMg01no120_c19.b1 PHD_FILE: MSMg01no120_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:32 2005
(283 letters)
>mm_chr16_85375385_85376067
Length = 683
Score = 501 bits (259), Expect = e-146
Identities = 277/283 (97%)
Strand = Plus / Plus
Query: 1 ggtggcccacaatttcattgccatctttatatagataggataattatccgtaggagaata 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ggtggcccacaatttcattgccatctttatatagataggataattataggtaggagaata 260
Query: 61 ttatggaaaacataaatttaaaccataaaattcttagaaaaagagcagcatggtaagaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ttatggaaaacataaatttaaaccataaaattcttagaaaaagagcagcatcgtaagaga 320
Query: 121 aatgaaatcccaaaccccagccttttagattcccggtggcataaattatggataagcaga 180
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 aatgaaatcccaaaccccaaccttttagactcccggtggcataaattatggataagcaga 380
Query: 181 agtaaacagtactgaggtctctcgagctttgtttgacaaaaggtctaagaattgtgctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtaaacagtactgaggtctctcgagctttgtttgacaaaaggtctaagaattgtgctca 440
Query: 241 gattgttttttattttatttttcttttgccttgtaatctttga 283
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 gattgttttttattttctttttcttttgccttgtaatctttga 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no120_c19.g1 MSMg01no120_c19.g1 CHROMAT_FILE:
MSMg01no120_c19.g1 PHD_FILE: MSMg01no120_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:32 2005
(513 letters)
>mm_chr16_85466738_85467648
Length = 911
Score = 862 bits (446), Expect = 0.0
Identities = 496/516 (96%), Gaps = 8/516 (1%)
Strand = Plus / Minus
Query: 1 tatgcttaccactgtattctgcttggcccagtggggcacagtgcaatggcaatataaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 711 tatgcttaccactgtattctgcttggcccagtggggcacagtgcaatggcaatgtaaata 652
Query: 61 ctgataacaattttaactaccgatagtgattacaaagtgattatgcatgccaaaggtgcc 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ctaataacaattttaactaccgatagtgattacaaagtgattatgcatgccaaaggtgcc 592
Query: 121 tataggtaagattgaaaacacttaactaaaaatgataacgagaaataagcttacaatgat 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 591 tataggtaagattgaaaacacttaactaaaaatgataacaagaaataagcttacaatgat 532
Query: 181 gttcagcaatgtagctgaaagttgaaaatggtagctatgggtgcagagcctggattagag 240
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 531 gttcagcaatgtagctgaaagttgaaaatggtagctatgggtgcagggcccggattagag 472
Query: 241 aacatgtattaa---gcccttcattgctccatatttaccaaacagcacatatgcatgcat 297
|||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aaca-g----aacactcccttcattgctccatatttaccaaacagcacatatgcatgcat 417
Query: 298 tgaaaaaacctagctcatgaaaatacactttctcccccagcgtatcgcagatatcctgta 357
||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct: 416 tgaaaaaacctagctcatgaaaatacagtttctcccccagcgtattgcagatattctgta 357
Query: 358 aatgttgacattatctgttagtagctgtgttttccttcactatgttgttaggcagttagc 417
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 356 aatgttgacattatctgttagtagctgtgttttccttcactatgttgttaggaagttagc 297
Query: 418 catggtgagtatcttacccattgcacctcactcactttggtaagcatccttcttatgtta 477
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 296 cttggtgagtatcttacccattgcacctcactcactttggtgagcatccttcttatgtta 237
Query: 478 tttgcgcatgcactactgtgttccatttccagggaa 513
||||||||||||||||||||||||||||||||||||
Sbjct: 236 tttgcgcatgcactactgtgttccatttccagggaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 911
Length adjustment: 10
Effective length of query: 503
Effective length of database: 901
Effective search space: 453203
Effective search space used: 453203
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
