BAC Information

Click to search

BAC

Clone NameMSMg01-120N23
Chromosome16 (Build37)
Map Location 15,278,084 - 15,278,707
singlet/doubletsinglet
Overlap genenone
Upstream geneMyh11, 0610037P05Rik, Abcc1, Gm1758, Snai2, Efcab1, LOC100042737, LOC665653, LOC385748
Downstream geneLOC100042743, LOC547302, EG632352, Ube2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120N23.T7 (MSMg01no120_n23.b1)MSMg01-120N23.TJ (MSMg01no120_n23.g1)
ACCAG331130AG331131
length706707
length of high quality
(start - end)
624 (76 - 699)578 (77 - 654)
definitionCHROMAT_FILE: MSMg01no120_n23.b1 PHD_FILE: MSMg01no120_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:27 2005CHROMAT_FILE: MSMg01no120_n23.g1 PHD_FILE: MSMg01no120_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGGAGTGGAGCCGCG
GAATTCCTTTCTAACAAAATAAGGAACACTTTTATCTCTGACAAGTTTCC
CATTCTGCTTAGGGATGCCCCTATAGAATTTCTTGTGATAAAGACATTTT
ATCCACCTCAATTCAACTAGCTTTCTCTCCCACCTCTCCCTAGGAACCAA
TAAGATACCTGTCAGCTCTGCCCTGCAGTCCCACAGCTTCTGCTCTCAGC
TCCCTCTTAAATTTTCCTGTCCCACCTCAGAGCTGCCTGCTCTGTCTCTT
CCTTAAGGGCTCATATGTCCTCCTTCTTGCAGCCTGTCTGAACCATTATG
GGCTCTCTCTCAGCTCCCTCTTTTCTTAGCCAACATCAAAGTAAATGGAG
AGAAACTTGAAGCAATCCCACTAAAATCAGGGACTACACAACGCTGCCCA
CTCTCTTCCTATCTATGCAACATAGTACTTGAAGTCCTGGCCAGAGCAAT
TTGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAGGGAGAAGTCA
AAATATCACTATTTGCAGATGATATGATAGTATATATAAGTGACCCCAAA
AATTCCACCAGAGAACTCCTAAACCTGATAAACAGCTTCAGTGCAATAGC
TGGATATAAATTAACTCAAACAAATCAGTGGCCTTTCTCTACTCAAAGGA
TAAACA
CCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAAGAAACAGACTGGGAG
GAAGAAGCAGCTCGTTATGAGAGAGAAAAGTGCCAGCCAGATAAAATGCG
AGCTAGTTGGTCAAGAAAAAAGCCAAAAGCGGCTGGCGAAGGCCAGTTTG
CTGCTTGGCCTCCGGGCAGTCGGCTTCAAGGTGCACTTCCGCCCTATGCG
GAGCCCCCGCCCTGCGTAGTGCGTCAGCCCTGCGCAGAGAGACAATGCGC
AGAGAGACAATGCGCAGATAGGCTATGCGCAGACTCATTCATTCCCAGAG
AGGAACAAAGGAAAATACAACAGGCATTTCCGGTCTTTGAAGGAGCCGAG
GGTGGGCGTGTCCACGCTCCGGTAGAATATGTGCAGATTAAAGAGCTTGC
CGAGTCGGTCCGTAAATATGGAGCCAATGCTAATTTTACCTTGGTGCAGT
TAGACAGGCTTGCCGGCATGGCACTAACTCCTGCCGACTGGCAAACGATT
GTAAAAGCCGCTCTCCCTAGTATGGGCAAATATATGGAATGGAGAGCTCT
TTGGCAAGAGGCTGCACAAGCGCAGGCCCGAGCAAACGCAGCTGCTTTGA
CTCCAGAGCAGAGAGATTGGACTTTTGACTTGTTAACGGGTCAGGCAGCT
TATTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_n23.b1 MSMg01no120_n23.b1 CHROMAT_FILE:
MSMg01no120_n23.b1 PHD_FILE: MSMg01no120_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:27 2005
         (624 letters)



>mm_chr16_15277884_15278907
          Length = 1024

 Score = 1162 bits (601), Expect = 0.0
 Identities = 619/625 (99%), Gaps = 2/625 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacttttatctctgacaagtttcccattctgcttagggatgcccctatagaatttcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacttttatctctgacaagtttcccattctgcttagggatgcccctatagaatttcttg 260

                                                                       
Query: 61  tgataaagacattttatccacctcaattcaactagctttctctcccacctctccctagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgataaagacattttatccacctcaattcaactagctttctctcccacctctccctagga 320

                                                                       
Query: 121 accaataagatacctgtcagctctgccctgcagtcccacagcttctgctctcagctccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accaataagatacctgtcagctctgccctgcagtcccacagcttctgctctcagctccct 380

                                                                       
Query: 181 cttaaattttcctgtcccacctcagagctgcctgctctgtctcttccttaagggctcata 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 cttaaattttcctgtcccacctcagagctgcctgctctgtctcttccttaagtgctcata 440

                                                                       
Query: 241 tgtc-ctccttcttgcagcctgtctgaaccattatgggctctctctcagctccctctttt 299
            | | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcctctcct-cttgcagcctgtctgaaccattatgggctctctctcagctccctctttt 499

                                                                       
Query: 300 cttagccaacatcaaagtaaatggagagaaacttgaagcaatcccactaaaatcagggac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cttagccaacatcaaagtaaatggagagaaacttgaagcaatcccactaaaatcagggac 559

                                                                       
Query: 360 tacacaacgctgcccactctcttcctatctatgcaacatagtacttgaagtcctggccag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 560 tacacaacgctgcccactctcttcctatctatgcaacatagtacttgaagtcctgaccag 619

                                                                       
Query: 420 agcaatttgacaacaaaaggagatcaaggggatacaaattggaaagggagaagtcaaaat 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agcaatttgacaacaaaaggagatcaaggggatacaaattggaaagggagaagtcaaaat 679

                                                                       
Query: 480 atcactatttgcagatgatatgatagtatatataagtgaccccaaaaattccaccagaga 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atcactatttgcagatgatatgatagtatatataagtgaccccaaaaattccaccagaga 739

                                                                       
Query: 540 actcctaaacctgataaacagcttcagtgcaatagctggatataaattaactcaaacaaa 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 actcctaaacctgataaacagcttcagtgcaatagctggatataaattaactcaaacaaa 799

                                    
Query: 600 tcagtggcctttctctactcaaagg 624
           |||||||||||||||||||||||||
Sbjct: 800 tcagtggcctttctctactcaaagg 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)