BAC Information

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BAC

Clone NameMSMg01-121F04
Chromosome16 (Build37)
Map Location 29,912,702 - 29,912,854
singlet/doubletsinglet
Overlap genenone
Upstream gene1600021P15Rik, EG666717, Hrasls, Atp13a5, Atp13a4, Opa1
Downstream geneGm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121F04.T7 (MSMg01no121_f04.b1)MSMg01-121F04.TJ (MSMg01no121_f04.g1)
ACCAG331465AG331466
length754736
length of high quality
(start - end)
---153 (82 - 234)
definitionCHROMAT_FILE: MSMg01no121_f04.b1 PHD_FILE: MSMg01no121_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:04 2005CHROMAT_FILE: MSMg01no121_f04.g1 PHD_FILE: MSMg01no121_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAAAGANCCGC
GGAAGTCCAAGGTTTCAGGAGNGAAGACACNANCGACAAACAAGCAGNTC
TTCCAAATTAGAGCTACTCACTCCCTTTGTGTCTGGCTGTCTGTCTGTCT
GATCCTTGGCAGAGCACAGCCACCTCCCGGGGGAAGGCGGACTGGCTGTT
TGTGACAGGAAGACAGGAATGGAGACCTGCTGCTGTGCCGGGCCAGGCAG
TTTTTTAGACTTGTTACCTCCTGACCTCTAAATAGCTGCTGCCGCTGTCT
CCGCCTGCCCACGCGCCCTCTTTTTTTTTCGAAAAGAAACAGCCCCAGCC
ACAACCCCCATTTTTTTTCCCCCCCCCCCCCCCCTGGGAGAGATAAGCGA
TAGATTAGTAGCGTGCCCTCTGTCCCCAAAAAAAAAATAACCCCCTGCCT
CGCCGGCCCAATTTCTTGATATCCTTATTTTCCACGCGATTCTTCCCCCC
ATCCCCCTCCCCCTTTTACCCCCTCTTGACGCCCCCCCTTTTAACCCATT
ACCCCCTTTATTATTTAGTTTTATTCGTCATTCCCTTAATATCTTTTTCC
CCCCGTTTCTAACTCCCCCGCCCTTTCGCCTGCCCCTCGCCGCCCTTCTG
GTCGGCTTCCTGCTCTCCCTTACCGATCCTCCCCTCTTTCTTTTTTATCT
ATCCCTCCCCCTCCCGCTCCTTTTCACGACCCCTTATGTCAACATACCGC
CGCG
AAACGATGATAGGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTAGGGTCACGTTCATGATTTGTT
TTTCTGAGGCCTCAAAATCTGAAGCTTGAAAAGAAGGGCACCAAGAAAAT
GTCTTTATGCTAGAGTCTGAAAGACAATAATCAAAATAGTCAAACTACAG
AAATGGACTGAGGACTTTATAATCATAGAAGATGGAGGGAGGAGCAXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTATTTTTTTTGCCCCCCCCCCCCGCTCCTCGGCATCCCCT
TACAGATAAACTCGCGACCTTCTTTCCCCAAAATAAAATCCCCCACTCTT
TTCTCTGCTCTCACCCATAATCCCCCACACCACACCCCCCCCCGCGACAC
TTCCCACTTCCTATACCCCCCCTTTCCTCCCCAATCATTCCCCTTCTTAC
TTCTCCCCCGCCCTATCTCTCCCCCCCCAAATTCCTCCGCTCCTCCCCCC
CCTCTCGCTCACCTCTCCCCCGCCACTTTCCCCTTCCCCCCCTCCCCTTC
TTTACACACCTCATTCTTCCACCCTTCTTTTCTCTACACCCTCCCCTCTC
CCCCACAATCCATTACCTAACCCTTCTCCCTTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_f04.g1 MSMg01no121_f04.g1 CHROMAT_FILE:
MSMg01no121_f04.g1 PHD_FILE: MSMg01no121_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:04 2005
         (153 letters)



>mm_chr16_29912502_29913054
          Length = 553

 Score =  273 bits (141), Expect = 4e-78
 Identities = 150/153 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcacgttcatgatttgtttttctgaggcctcaaaatctgaagcttgaaaagaagggcac 60
           ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtcactttcatgatttgttttcctgaggcctcaaaatctgaagcttgaaaagaagggcac 260

                                                                       
Query: 61  caagaaaatgtctttatgctagagtctgaaagacaataatcaaaatagtcaaactacaga 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 caagaaaatgtctttatgctagagtctgaaagacaatagtcaaaatagtcaaactacaga 320

                                            
Query: 121 aatggactgaggactttataatcatagaagatg 153
           |||||||||||||||||||||||||||||||||
Sbjct: 321 aatggactgaggactttataatcatagaagatg 353


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 553
Length adjustment: 8
Effective length of query: 145
Effective length of database: 545
Effective search space:    79025
Effective search space used:    79025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)