Query= MSMg01no121_p18.b1 MSMg01no121_p18.b1 CHROMAT_FILE:
MSMg01no121_p18.b1 PHD_FILE: MSMg01no121_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:57 2005
(285 letters)
>mm_chr16_58074758_58075442
Length = 685
Score = 551 bits (285), Expect = e-161
Identities = 285/285 (100%)
Strand = Plus / Plus
Query: 1 tgtggagttcatactctactagaggaaccacaaaactgtttttatcatatttttattact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtggagttcatactctactagaggaaccacaaaactgtttttatcatatttttattact 260
Query: 61 ggcaaatctcaatgaaagaaagaaaaaacagcctttgaattgaatggacatttgaactca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaaatctcaatgaaagaaagaaaaaacagcctttgaattgaatggacatttgaactca 320
Query: 121 ttttctaatgattatctttgttgtactggctggttgtgtgtgtcaacttgacacaagctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttctaatgattatctttgttgtactggctggttgtgtgtgtcaacttgacacaagctg 380
Query: 181 gagttatcacagagaaaggagcctcccttgaggaaatgcctccatgagatccagttgtaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagttatcacagagaaaggagcctcccttgaggaaatgcctccatgagatccagttgtaa 440
Query: 241 ggcattttctcaattagtgaacatgggggaggccccagcctattg 285
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcattttctcaattagtgaacatgggggaggccccagcctattg 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no121_p18.g1 MSMg01no121_p18.g1 CHROMAT_FILE:
MSMg01no121_p18.g1 PHD_FILE: MSMg01no121_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:57 2005
(554 letters)
>mm_chr16_58172157_58173110
Length = 954
Score = 926 bits (479), Expect = 0.0
Identities = 533/551 (96%), Gaps = 2/551 (0%)
Strand = Plus / Minus
Query: 5 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacatggacatctgggtatgggaagacc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacatggacatctgggtatgggaagacc 728
Query: 65 agaggttgacgctgcttgtcctcaagccctcgtacctggtttgctcttggagacagtgtg 124
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 727 agaggttgacgctgcttgtcctcaagtcctcgtacctggtttgctcttggagacactgtg 668
Query: 125 ctcccatcatgcttgggttttaaatgaatggtggggctctgaactcagatctgtgttgct 184
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 667 ctcccatcatgcttgggttttaaatgaatggtggggctctgaactcagatccgtgttgct 608
Query: 185 ttgtagaagagcttaaaaaacgttactgttctgagtttagaatttatttttatcttgcct 244
|||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 607 ttgtagaagagctt-aaaaacattactgttgtgagtttagaatttatttttatcttgcct 549
Query: 245 aatgctggaacaaataatctggatcctaagggggaaaaatcatccagggagagagtggaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aatgctggaacaaataatctggatcctaagggggaaaaatcatccagggagagagtggaa 489
Query: 305 taagtaaggaaaatcctcaaaacaaatgtagctgtttcttcctctattcatcgctataaa 364
|| |||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 488 tacgtaaggaaaatcttcaaaacaaatgtaggtgtttctttctctattcatcgctataaa 429
Query: 365 cacagtcaccttgcttttttcagagactgtaataagacagctatagtttaagtgataaag 424
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 428 cacagtcaccttgcttttttcagagactgtagtaagacagctatagtttaagtgataaag 369
Query: 425 ggtaatagataaagtagcctggtctattacacggttttgcctggtcatatctcatgcagc 484
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 368 gataatagataaagtagcctggtctattacactgttttgcctggtcatatctcatgcagt 309
Query: 485 gcattt-gaatgcattgcttcctccctatgaggtacaatcattctaccaagttcaatggt 543
|||||| ||||| ||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 308 gcattttgaatgaattgcttcccccctatgaggtaaaatcattctaccaagttcaatggt 249
Query: 544 gctaggttaac 554
|||||||||||
Sbjct: 248 gctaggttaac 238
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 14
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
