BAC Information

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BAC

Clone NameMSMg01-122D09
Chromosome16 (Build37)
Map Location 25,351,316 - 25,511,826
singlet/doubletdoublet
Overlap gene5430420C16Rik
Upstream geneLOC666580, LOC100043564, 1110054M08Rik, Lpp, A730098P11Rik
Downstream geneTrp63, LOC100043571, Leprel1, Cldn1, Cldn16, LOC100043057
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122D09.T7 (MSMg01no122_d09.b1)MSMg01-122D09.TJ (MSMg01no122_d09.g1)
ACCAG332130AG332131
length1,1611,151
length of high quality
(start - end)
529 (125 - 653)467 (122 - 588)
definitionCHROMAT_FILE: MSMg01no122_d09.b1 PHD_FILE: MSMg01no122_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:25 2005CHROMAT_FILE: MSMg01no122_d09.g1 PHD_FILE: MSMg01no122_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,511,298 - 25,511,826)(25,351,316 - 25,351,782)
sequence
CTCTTCTTTGTCCACTCGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCAATATAACTTCACCCTTAAAGAGCATGAAATCATCCTTTG
CTGGAAGTGGACCCCTTTGAGTTGTATCTTATAGAAGTCAAAAATCAAAT
ATCCTGGAATTGATCTATGCTTCAGGAATATGATTCTCCTTTCTTGCCTT
TGTTGACCTTTCTAGTCCTACTAGGCAAGGGTGTGTCAGTGTGCTCAGCC
ACTCAAAAGTTCATCTTTGTGTCAAATTAGATCCACCAATAAGTGCTTGA
GCAGTGGCTTCATGCTTGTTACATGACGCAGCCACTTTCAGCACATGTTA
TAGCACAGTGGTCTTCTGAAGCCATAGGAGATACAATTAGTAGCCATTGA
TACTAAGGCTGGGATGCCATTCTCCAGCAAATGATGTAAAACTGAGTGGG
TGAGCACTGAATGGCCCTACCCCCAGTAGGCAGAACAAAGAAGTACAAGA
AAGAAGAGCAACCAGAGTGTGTAATTTACCATCACAATTATCACCACTCG
GGGGATCTGAATTTCATATCTCAACATTATTGGTCTTTGTATATTTCAAC
CTCCCATTTTCATGCAATGTATTATTGGAAATGAATAGTAGATAAAGATG
TGGTCACAGAGCTTATAATAATAAAATAGAAAACTAGAATAAGTTATAAT
AATAAATGGAATGATAAATTATTTTTTGAAAACACAGAGAGGAAGCTAAA
ATGAATGTGTCCTTCTATTTTTTGTTCTGGATTTTTTTGCTTTGTACTGT
ATTTCACAGGGTAGACAGTGATATGGAGCTCTGATTCAATGAAAATGTGT
AAGTGTCTATAAAAAGGGTATTGGTGTAGAGGGCCTCAGTGGGTAAATAA
TGGTCTGCTTGAATGAAGCTGGAGTACCCGCAATTTCCAAATCCTATCCT
TCCCTTAATTGCCTTGGCCCATGGAATCTTCCGCTACAATTGAGGTTGAC
CTTACATAATGTGAAATCTATTGAACTCCCTTAATTAAAAACCCTAATTT
TTTTCCTTCCAGGGTTTCTAGCGAAAAAAACACTCTCTTGTTCATATAGG
AAAAGTGGTTCTAATAATCTACACACCCCTTTTGAAAAATATTTATATCT
TGTTTCCTCTA
TCCCAACCACGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTTTAAACGCTTTACCTAAAATTTTAATTTCTC
AATAGGCCCTTAAAATTCCCTTGTACATATCTACCACATTGTCATTATCC
ATCCATTGATTGATGAACATCTAGGCTGCTTCCATTTCCTAGCTATTGGG
AATGCAGCTGCAATGTACATGGCCATTGTACAAGCAAGTGTCTGCAGAAG
AGGATATTGAGTCCTTTGGGTATATTCCAGGAGTGGCATATCTGGATCAT
ATGATAGGTCTACTTTTATCTTTTTGAGAAGTCATCACATCAGTTTCGCC
AATGGCTGCACCTGCTTGAAACTTCTCATCAGTTTTCCCCTCTATTTTTA
TGTAGTCTAGATGGCATGAGATGAAATCTCAAACCAGGACATCTTTTGCT
CACAAATCACTCCCCAAGTTCACCTAAAGCAAAAAAAAAAAAGAACTTTT
GCACTGCCAAGGAAACAAATCAATTAAGTAAACAAGTCCACAGAGTGGGA
GGAATCTTTGTCAGTTGTATGTCCAGCACAGGTGAATAGCCAGAGTACAC
AAAGATCTTAAGAATTCAAGAAAGCAAACTACCTAATTTAACAATGAGCT
GTATCCCCGATGAGAAAGCCTGTAAAGGAAATGAAAATGGCCAAGAAATA
AGTTTAAAAAATAAAAACTGTTTATCAACCTTATCAATCAGAAAAATACA
AAATATTTTCTTAAGTTTAAAAGTAAACTATTTTAGTGGCTAGGGAAACA
ACTGTCCTAATGACCGTGTTTGCTTATGCATGTATGAAAAAGCCAAGTCT
AAATTCTTCCAAAACCCCACATAAAACTGGGTCATTGTGGTCAAAAATCC
AATAATTCTCACACTAACGAGGAAATAGATCAGAAACAATTTCCGGAAAG
CTATTCTGTTACATTCTTTTCTAATCCAATTCCGGAGAAAAATCCAGTTC
TTCCAGTGAAAATGACCCCTGCCCTCTCTAAAAATTCAATTTTAGATAAA
ATCTAACCTGGGGCAACTCCATCGCGATTTTTGAACTCCCCACCTTTGCC
CAAGGCTCCTTAAATTTTTTGGCTCTTGGTTCCNCCTTTGTCCCTTGAAA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_d09.b1 MSMg01no122_d09.b1 CHROMAT_FILE:
MSMg01no122_d09.b1 PHD_FILE: MSMg01no122_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:25 2005
         (529 letters)



>mm_chr16_25511098_25512026
          Length = 929

 Score =  992 bits (513), Expect = 0.0
 Identities = 525/529 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatcttatagaagtcaaaaatcaaatatcctggaattgatctatgcttcaggaatatgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tatcttatagaagtcaaaaatcaaatatcctggaattgatctatgcttcaggaatatgat 670

                                                                       
Query: 61  tctcctttcttgcctttgttgacctttctagtcctactaggcaagggtgtgtcagtgtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tctcctttcttgcctttgttgacctttctagtcctactaggcaagggtgtgtcagtgtgc 610

                                                                       
Query: 121 tcagccactcaaaagttcatctttgtgtcaaattagatccaccaataagtgcttgagcag 180
           ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 609 tcagccactcataagttcatctttgtgtcaaattagatccaccagtaagtgcttgagcag 550

                                                                       
Query: 181 tggcttcatgcttgttacatgacgcagccactttcagcacatgttatagcacagtggtct 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 549 tggcttcatgcttgttacatgactcagccactttcagcacatgttatagcacagtggtct 490

                                                                       
Query: 241 tctgaagccataggagatacaattagtagccattgatactaaggctgggatgccattctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tctgaagccataggagatacaattagtagccattgatactaaggctgggatgccattctc 430

                                                                       
Query: 301 cagcaaatgatgtaaaactgagtgggtgagcactgaatggccctacccccagtaggcaga 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 cagcaaatgatgtaaagctgagtgggtgagcactgaatggccctacccccagtaggcaga 370

                                                                       
Query: 361 acaaagaagtacaagaaagaagagcaaccagagtgtgtaatttaccatcacaattatcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 acaaagaagtacaagaaagaagagcaaccagagtgtgtaatttaccatcacaattatcac 310

                                                                       
Query: 421 cactcgggggatctgaatttcatatctcaacattattggtctttgtatatttcaacctcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cactcgggggatctgaatttcatatctcaacattattggtctttgtatatttcaacctcc 250

                                                            
Query: 481 cattttcatgcaatgtattattggaaatgaatagtagataaagatgtgg 529
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cattttcatgcaatgtattattggaaatgaatagtagataaagatgtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no122_d09.g1 MSMg01no122_d09.g1 CHROMAT_FILE:
MSMg01no122_d09.g1 PHD_FILE: MSMg01no122_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:25 2005
         (467 letters)



>mm_chr16_25351116_25351982
          Length = 867

 Score =  880 bits (455), Expect = 0.0
 Identities = 464/467 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtacatatctaccacattgtcattatccatccattgattgatgaacatctaggctgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtacatatctaccacattgtcattatccatccattgattgatgaacatctaggctgctt 260

                                                                       
Query: 61  ccatttcctagctattgggaatgcagctgcaatgtacatggccattgtacaagcaagtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatttcctagctattgggaatgcagctgcaatgtacatggccattgtacaagcaagtgt 320

                                                                       
Query: 121 ctgcagaagaggatattgagtcctttgggtatattccaggagtggcatatctggatcata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 ctgcagaagaggatattgagtcctttgggtatattccaggagtggcatagctggatcata 380

                                                                       
Query: 181 tgataggtctacttttatctttttgagaagtcatcacatcagtttcgccaatggctgcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgataggtctacttttatctttttgagaagtcatcacatcagtttcgccaatggctgcac 440

                                                                       
Query: 241 ctgcttgaaacttctcatcagttttcccctctatttttatgtagtctagatggcatgaga 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 ctgcttgaaacttctcatcagttttcccctctaattttatgtagtctagatggcatgaga 500

                                                                       
Query: 301 tgaaatctcaaaccaggacatcttttgctcacaaatcactccccaagttcacctaaagca 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 tgaaatctcaaaccaggacatcttttgctcagaaatcactccccaagttcacctaaagca 560

                                                                       
Query: 361 aaaaaaaaaaagaacttttgcactgccaaggaaacaaatcaattaagtaaacaagtccac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaaaaaaaagaacttttgcactgccaaggaaacaaatcaattaagtaaacaagtccac 620

                                                          
Query: 421 agagtgggaggaatctttgtcagttgtatgtccagcacaggtgaata 467
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagtgggaggaatctttgtcagttgtatgtccagcacaggtgaata 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)