BAC Information

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BAC

Clone NameMSMg01-122F23
Chromosome16 (Build37)
Map Location 55,569,805 - 55,570,409
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043449, LOC667927, LOC436421, Zpld1
Downstream geneNfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2, LOC672835, Abi3bp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122F23.T7 (MSMg01no122_f23.b1)MSMg01-122F23.TJ (MSMg01no122_f23.g1)
ACCAG332252AG332253
length5681,071
length of high quality
(start - end)
72 (98 - 169)625 (130 - 754)
definitionCHROMAT_FILE: MSMg01no122_f23.b1 PHD_FILE: MSMg01no122_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:45 2005CHROMAT_FILE: MSMg01no122_f23.g1 PHD_FILE: MSMg01no122_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGNAATGGGAAATAAAGGAGACGGATCTAAAGACCTAAACCNNNNNN
GANANGCCTTAACCGNNGGGNNNGANGANAAGAANGNGNGNANGCCCGCG
CACGCACACACACACACACACACACACACACACACACACACACACACACN
CGCACACACACACACATACAACACANCACACACACACACACNAAAGCAAT
TTTTAAGGCAACACAAGAACAACCCGAGCCCCCAAACCGAAAAAAAGAGA
ACCCAAAAAGGCAGAACACAGGAAGAGGGACAAAAAAGAAAAAAGGACGG
AACGGGAAAGGCGCAGCCAAGGAGAAAAACAGAAAAGACCAAAACGGAAA
CCCAAGGCGGGAGACAAAAAACAGAACCCACCGTTTTTAACCCCCCCCCC
CCCGACGCCAGAGGAACCCAAACCCGCCTAGTTATGACCCAACGGCAACA
GCCCAGGATAGCCCCCACCCCGGGAGGAGAAAGGAACCCCGCAATAACGG
CGGACCTAAGGAAGCCCCCCCTCGGGAATTTCAGGAAAATCTGGACAGGG
ACCTCCTATTCCTCCCGA
NCCGTATTTTNNNAAATCATGTGAGGCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTAAGGACCGGCAGGGCTACA
CAGAGAAACCCTGTCTCCTTTACAAACCCCAAAAAGAAAGAAAGAAAGAA
AGAGAGAGAGGGGGAGAGAGAGAGAGAGAAAGAAAGGAAGAAAGGAAGTT
AAGCAATAATGACATACACATAAGTATTCTATAGAAGTGTTCGTAGAAGT
GGTAAGACAACACTGAGAAATCTAGGATGACTTATATGGCTAATTATACT
TAGAAACTCAAAGGGAATGTTAAATTACTCTTTTAATATATTTTTTATTC
ATTAATACAATCTATTTTATCATATTTACTCTTACTCCTCCCTCTCCCTC
CTCTTGTATACACTGCACCTTTTCACTCCTCCCAGTTTCTGGGTGCTCCT
TTCTTTTTATAATACCCCCCTGAGTCCAGTTTGGACCGACCACATACTCC
AAGTCTGGCCTACTTTAGGAAATAGAACAAACTTAAATAAGAATTCCTCC
TCCTCCTACTTGCCAGGAATAAAAATAATAATAATAAATAAACTTTACAA
AATGAGTTAGGAGGAAGGATCACCAAAGAAGTCATCCATCTTCCCATATC
TAAACATACCACATTGCTTAGGAATGGCTCAGCAAATGCTAACAGACATC
ACCATACAAAGCTAACGTATTAAAACTCAGTGACGCACAGAGCTTACCAC
ACAGTAATTTTCCAACAGGGGTCTGCTGAGTTGGCAAAGCTGGGATATAA
TTTGGCCAGCTTGAAAGAACATTTCCCTTTTAACCTAAAATAGATAATAT
TATCCTAACTCTTTCTGGAAAAAATATTTGGAAAGCATGAAGTTTACATT
TTTCCACATAATTTAGAAAACTGTGGATCCTTGAAGGCCCAAGGGGAACG
GAACCAAGCCTTGGGGCACCCTTGCCAGAAGGGTAATAAAATTAACCCCC
CCGTCCATTTTTTAATGGAAACAACCCCGAATTTTTCCATTTACCCCTTG
GCCCCCCAAAAAAAATGCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_f23.g1 MSMg01no122_f23.g1 CHROMAT_FILE:
MSMg01no122_f23.g1 PHD_FILE: MSMg01no122_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:45 2005
         (625 letters)



>mm_chr16_55569585_55570609
          Length = 1025

 Score = 1077 bits (557), Expect = 0.0
 Identities = 593/605 (98%), Gaps = 1/605 (0%)
 Strand = Plus / Plus

                                                                       
Query: 22  agagagagagggggagagagagagagagaaagaaaggaagaaaggaagttaagcaataat 81
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 agagagagagagagagagagagagagagaaagaaaggaagaaaggaagttaagcaataat 280

                                                                       
Query: 82  gacatacacataagtattctatagaagtgttcgtagaagtggtaagacaacactgagaaa 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gacatacacataagtattctatagaagtgttcgtagaagtggtaagacaacactgagaaa 340

                                                                       
Query: 142 tctaggatgacttatatggctaattatacttagaaactcaaagggaatgttaaattactc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tctaggatgacttatatggctaattatacttagaaactcaaagggaatgttaaattactc 400

                                                                       
Query: 202 ttttaatatattttttattcattaatacaatctattttatcatatttactcttactcctc 261
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 401 ttttaatatattttttattcattaacacaatctattttatcatatttactcttactcctc 460

                                                                       
Query: 262 cctctccctcctcttgtatacactgcaccttttcactcctcccagtttctgggtgctcct 321
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 cctctccctcctcctggatacactgcaccttttcactcctcccagtttctgggtgctcct 520

                                                                       
Query: 322 ttct-ttttataatacccccctgagtccagtttggaccgaccacatactccaagtctggc 380
           |||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ttcacttttaaaatacccccctgagtccagtttggaccgaccacatactccaagtctggc 580

                                                                       
Query: 381 ctactttaggaaatagaacaaacttaaataagaattcctcctcctcctacttgccaggaa 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ctactttaggaaatagaacaaacttaaataagaattcctcctcctcctacttgccaggaa 640

                                                                       
Query: 441 taaaaataataataataaataaactttacaaaatgagttaggaggaaggatcaccaaaga 500
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 641 taaaaataataataataaataaactttaaaaaatgagttaggaggaaggatcaccaaaga 700

                                                                       
Query: 501 agtcatccatcttcccatatctaaacataccacattgcttaggaatggctcagcaaatgc 560
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 701 agtcatccatcttcccatatctaaacataccacatcgcttaggaatggctcagcaaatgc 760

                                                                       
Query: 561 taacagacatcaccatacaaagctaacgtattaaaactcagtgacgcacagagcttacca 620
           |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 761 taacagacatcaccgtacaaagctaacgtattaaaactcagtgacgcacagagtttacca 820

                
Query: 621 cacag 625
           |||||
Sbjct: 821 cacag 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)