BAC Information

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BAC

Clone NameMSMg01-122J07
Chromosome16 (Build37)
Map Location 83,334,866 - 83,335,574
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665260
Downstream geneEG545172, LOC100039572, EG621729, LOC640489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122J07.T7 (MSMg01no122_j07.b1)MSMg01-122J07.TJ (MSMg01no122_j07.g1)
ACCAG332402AG332403
length1,1131,158
length of high quality
(start - end)		800 (38 - 837)708 (131 - 838)
definitionCHROMAT_FILE: MSMg01no122_j07.b1 PHD_FILE: MSMg01no122_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:11 2005CHROMAT_FILE: MSMg01no122_j07.g1 PHD_FILE: MSMg01no122_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGATATATTNNNTATCAGTGGGCGCTATAGACTCCTATAGGGAGAGGATC
CGCGGAATTCCTAAAATTATTCTAGCCATTATTAAGTCATTTCATAATAG
GACTGCAATTAAGGCCCTCTGTGATATGAATACTGCAATTAGAACTCTGC
CAGTCTTCACCTGTCCTGGGCCATTTGCACTAAGTTAGAAGCAGACAGAC
TCACAATTAATGAACACATTCCTTAGGGTTGTAAAACAATTAACTAAAGG
CCATAAATAAAGAATTAATTATTTATTGTAGAAAAGATAGAAGATAAAAT
ATTCACTGGGTTTATCTATGCAAAACATCATTGATAATTTAGGAATCAAA
ATTAGTTTTTGACTTTTAATGAACCTGTGGAGCTCGAGACAGAAAATGAA
TCTCTAGTTAAATAGCTAATTTTAATGGAAACACACTTATTCAGTTTATG
ATTTGAAATTATGCTTAAACTTGAGGTGAAATTTTGAAATATAAACCATG
TGGTGTGTTCTCCTTCAAGAGATACAATGAACTAGACATTATTATATTAG
CGAGAAGGAGAGAGCAGAATGCAGAATGCAGAAGGAGAATTCTTAGAAAC
TAAGGCAGAATGAGGAGAGACAGAATATAGCAAAATATAACAGATCATAT
GAGAGAGATGAAGAGAGACAGAGAAGCCCAGAGCGAAGGAAGAGCAGGTG
AGCTTCTCCTTACCATGGGACAGAGCAGGGGTTTTCATAACAACAAGGCA
GGTTTGGTCTTACTAAAGAGGACAAAGTTTTTTTTGTTTTTCTCTTCTTC
TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTATCTTCTCTTC
TCTTCTCTTCCCCTCCCTTCTCTTCCCTTCTCTTCTCTTCTCTTCTCCTC
TCCTCTCCTCTCCTCTCCACCTCATTTCATCTCCTTTCCATCTCCTTCTT
ATTCTCTTATCTTCTTTACTCTCTTCTCTTTTACTTATTTTTTTCCTATT
TTTTTTTCTTAATACTTTCCTCTCATCAAATAATTTCTTCCTATCTCTTT
TATCTTTACTCCTTACTTATCCTCTTTTTTTTTCTTATTTCATTTTCTAT
CTACTCAATATTA

NNAAAAAAAATNTNAAAAACAGGTGAGGCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGAGAAAAGCTGA
GGCTGAAAATACCACAGATTTCATTCTTGTGGTTACAGAAAGAAGAAAAT
TAATCTATATAGTGTCACTGAATATAATTTATTTTGTAACACTGAAACTT
AAAAAAAAAATCAAATCAAAGTTTTGCATGAAGTGAATTCTCCTTAGATG
ATCAAATGTACAAACCATAGCTAGAATATAGAGTAAACAGTTAACAACAA
CAAGAACAAGCAAAAATAATGATGAATAAATGCAAGCATCTAGGAGAGAG
CAGTGGTGATCAGAAAAACAGAAATATAAAATTGTCAGTAATGTGTGCCA
AACAAACAAACAAACACACAAACAAACAACAAATTAGTAGTTAAAGGCAT
CTGAACTTTTCTAGTTTTCCTTATCACTCCTGCATGGAAACAAAGGAGCT
GATTAAACAGTGGCTGGATTTTCAAAGCAATTTGGCATAAAGGTTGTGCT
TGCTATTTGGAAGATGTTACCAAAAAGAGCACCACTGTCAGTAATCAAAA
ATAAAAATAAAATAATTAATAAATAATAAAAAAGAACGAAAAAAGAAAAG
AGAGAAAGAAAGAAAGAGAGAGAGAAAGAAAAAAAGAAAGAAAGAAAGAA
AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG
AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGGGGCAAAG
GAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGAAAGAAAGAAAGAATGAAAGAACCAAACATTTGCCCGAAA
AAACAAAATAACACCCCGGCTTTTGGTTACCCTGAACGGGAAACTTTCTG
GACAGGGAATTACGGGAATAGTGGAAAAAAAAGGGAAGAAAGGGGTTAGA
CTAATAAGGTGGGCCTCCTGATAATCCCATGCCATATTTTTAAGGTTTTA
AGAAGAAGGGGAGTTTTAGAACCCATAAAAAAGGAACTGCTCTAAAGTTG
TTAATGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_j07.g1 MSMg01no122_j07.g1 CHROMAT_FILE:
MSMg01no122_j07.g1 PHD_FILE: MSMg01no122_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:11 2005
         (708 letters)



>mm_chr16_83334666_83335776
          Length = 1111

 Score = 1052 bits (544), Expect = 0.0
 Identities = 667/726 (91%), Gaps = 35/726 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggttacagaaagaagaaaattaatctatatagtgtcactgaatataatttattttgtaac 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggttacagaaagaagaaaatgaatctatatagtgtcactgaatataatttattttgtaac 260

                                                                       
Query: 61  actgaaacttaaaaaaa----aaatcaaatcaaagttttgcatgaagtgaattctcctta 116
           |||||||||||||||||    ||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 actgaaacttaaaaaaaagtcaaatc-aatcaaagttttgcatgaagtgaattctcctta 319

                                                                       
Query: 117 gatgatcaaatgtacaaaccatagctagaatatagagtaaacagttaacaacaacaagaa 176
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aatgatcaaatgtacaaaccatagctagaatatagagtaaacagttaacaacaacaagaa 379

                                                                       
Query: 177 caagcaaaaataatgatgaataaatgcaagcatctaggagagagcagtggtgatcagaaa 236
           ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 380 caagcaaaaataatgatgagtaaatgtaagcatctaggagagagcagtggtgatcagaaa 439

                                                                       
Query: 237 aacagaaatataaaattgtcagtaatgtgtgccaaacaaacaaacaaacacacaaacaaa 296
           |||||||||||||||||||||||||||||||||||                |||||||||
Sbjct: 440 aacagaaatataaaattgtcagtaatgtgtgccaa----------------acaaacaaa 483

                                                                       
Query: 297 caacaaattagtagttaaaggcatctgaacttttctagttttccttatcactcctgcatg 356
           |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 484 caacaaattagtggttaaaggcatctgaacttgtctagttttccttatcactcctgcatg 543

                                                                       
Query: 357 gaaacaaaggagctgattaaacagtggctggattttcaaagcaatttggcataaaggttg 416
           ||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 544 gaagctaaggagctgattaaacaatggctggattttcaaagcaatttggcataaaggttg 603

                                                                       
Query: 417 tgcttgctatttggaagatgttaccaaaaagagcaccactgtcagtaatcaaaaataaaa 476
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tgcttgctctttggaagatgttaccaaaaagagcaccactgtcagtaatcaaaaataaaa 663

                                                                       
Query: 477 ataaaataattaataaataataaaaaagaacgaaaaaagaaaagagagaaagaaagaaag 536
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 664 ataaaataattaataaataataaaaaagaaagaaaaaagaaaagagagaaagaaagaaag 723

                                                                       
Query: 537 agagagaga--aagaaaaa-a-agaa----agaaagaaagaaagaaagaaagaaagaaag 588
           |||||||||  |||||| | | ||||    ||||||| ||| ||||||||||||||||||
Sbjct: 724 agagagagagaaagaaagagagagaataaaagaaagagagagagaaagaaagaaagaaag 783

                                                                       
Query: 589 aaagaaagaaagaaagaaagaaagaaagaaagaga------aagaaagaaagaaagaaag 642
           |||||||||||||||||||||||||||||||||||      ||| ||| ||| |||||||
Sbjct: 784 aaagaaagaaagaaagaaagaaagaaagaaagagaggggcaaaggaaggaaggaagaaag 843

                                                                       
Query: 643 aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag 702
           |||||||||||||||||||||||||||||||||||| ||| ||| ||| ||| ||| |||
Sbjct: 844 aaagaaagaaagaaagaaagaaagaaagaaagaaaggaaggaaggaaggaaggaaggaag 903

                 
Query: 703 aaagaa 708
            |||||
Sbjct: 904 gaagaa 909


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 220
Number of extensions: 73
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1111
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1101
Effective search space:   768498
Effective search space used:   768498
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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