Query= MSMg01no122_k02.b1 MSMg01no122_k02.b1 CHROMAT_FILE:
MSMg01no122_k02.b1 PHD_FILE: MSMg01no122_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:18 2005
(771 letters)
>mm_chr16_93606440_93607612
Length = 1173
Score = 1332 bits (689), Expect = 0.0
Identities = 749/775 (96%), Gaps = 14/775 (1%)
Strand = Plus / Minus
Query: 5 gaattcagctcttaggacacc----ccattaaagctattggggtaatctttaggcaggaa 60
||||||| ||||||||||||| | ||||||||||||||||||||| ||||||||
Sbjct: 891 gaattcacctcttaggacaccaaagc----aaagctattggggtaatctttgggcaggaa 836
Query: 61 acattccttactagcctgtggtatccctttagatacttctaattgctttgtcttacctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 acattccttactagcctgtggtatccctttagatacttctaattgctttgtcttacctgg 776
Query: 121 atgtttgtatt--gtgtacagatgtgtacagggccttcaggggctgctgctcttctgtgc 178
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 775 atgtttgtattgagtgtacagatgtgtacagggccttcaggggatgctgctcttctgtgc 716
Query: 179 accacaatgcacccttttagtccccttttaagatgacatgatgccgtatgcgcgcaaaat 238
|||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 715 accacaatgcacccttttagtccctttttaagatgacatgatgccatatgctcgcaaaat 656
Query: 239 gaaatttggttcagtcgtgggaaacagatttcgtcactggttcctaacaccctggctata 298
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gacatttggttcagtcgtgggaaacagatttcgtcactggttcctaacaccctggctata 596
Query: 299 gggatctccaggtcaagtttcgtttcctctccattcagtaggttgctattagaaacaagt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gggatctccaggtcaagtttcgtttcctctccattcagtaggttgctattagaaacaagt 536
Query: 359 ggccatttagattaaagtaagacattttagttatactgaccccacaggaagacctctctt 418
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ggccatttagattaaaataagacattttagttatactgaccccacaggaagacctctct- 477
Query: 419 tgtgtgtatgaaggtcattgtattaggaatacagtaaaataaaggagacaggtataagat 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 -gtgtgtatgaaggtcattgtattaggaatacagtaaaataaaggagacaggtataagat 418
Query: 479 ttccatttcaaaagattctactgcctcatatacattgcttgtaaattgccattcaaagta 538
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 417 ttccatttcaaaatattctactgcctcatatacattgcttgtaaattgccgttcaaagta 358
Query: 539 agctcctagtcaattgcttaagaagcctgaataatc--aaaaaaaaaatgctgcccaggg 596
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 357 agctcctagtcaattgcttaagaaacctgaataatccaaaaaaaaaaatgctgcccaggg 298
Query: 597 tgggatggctcagcaagtgagggcaaggaccttggtcacccagcagcctgagttcaatcc 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tgggatggctcagcaagtgagggcaaggaccttggtcacccagcagcctgagttcaatcc 238
Query: 657 ttggaacccatgtaaccacgggaagcaagaacggtgtatgcgtgttctgattgaacccat 716
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ttggaacccatgtaaccacaggaagcaagaacggtgtatgcgtgttctgattgaacccat 178
Query: 717 gtctgcgtaccatgtgccatgcccagagggcagaagagggcaccgggcatcagat 771
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gtctgcgtaccatgtgccatgcccagagggcagaagagggcaccgggcatcagat 123
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 771
Length of database: 1173
Length adjustment: 10
Effective length of query: 761
Effective length of database: 1163
Effective search space: 885043
Effective search space used: 885043
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_k02.g1 MSMg01no122_k02.g1 CHROMAT_FILE:
MSMg01no122_k02.g1 PHD_FILE: MSMg01no122_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:18 2005
(413 letters)
>mm_chr16_93540324_93541136
Length = 813
Score = 721 bits (373), Expect = 0.0
Identities = 394/409 (96%), Gaps = 13/409 (3%)
Strand = Plus / Plus
Query: 1 agctttgataaatgtgctacagaatctgagtgttttccctccagtcctggaactgtcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctttgataaatgtgctacagaatctgagtgttttccctccagtcctggaactgtcctg 260
Query: 61 aggcctctgagcactgtacagacagcagtgacacagagcagtgggtcagacagaatgcgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcctctgagcactgtacagacagcagtgacacagagcagtgggtcagacagaatgcgt 320
Query: 121 ctcccttagccctcctctctagagcagcctttcccatctcacctggtaccttcaggctgt 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcccttagccctcctctctagaacagcctttcccatctcacctggtaccttcaggctgt 380
Query: 181 gctagtcttcacacagaggtaaagacttccactgtgtctgcctctaactcttgtacagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctagtcttcacacagaggtaaagacttccactgtgtctgcctctaactcttgtacagaa 440
Query: 241 agaagccaatatactttgcagtcctcaacacaagtgacacagtcctcagcatctaagagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaagccaatatactttgcagtcctcaacacaagtgacacagtcctcagcatctaagagg 500
Query: 301 acattctgggcctctgtctctgagggagaacagcctcactccgtataactgtttcatgca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acattctgggcctctgtctctgagggagaacagcctcactccgtataactgtttcatgca 560
Query: 361 agacaggcatgaaaagagcggatgggtgggtgggtggatggatggatga 409
||||||||||| ||||||||| |||||||||||||||
Sbjct: 561 agacaggcatg-------------ggtgggtggatggatggatggatga 596
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space: 324816
Effective search space used: 324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
