Query= MSMg01no122_n16.b1 MSMg01no122_n16.b1 CHROMAT_FILE:
MSMg01no122_n16.b1 PHD_FILE: MSMg01no122_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:47 2005
(755 letters)
>mm_chr16_53743069_53744224
Length = 1156
Score = 1338 bits (692), Expect = 0.0
Identities = 737/752 (98%), Gaps = 1/752 (0%)
Strand = Plus / Plus
Query: 5 gaattcacttggtgaagtttcccttgaaagcacatctttacttaaaaattcatgatttat 64
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacttggtgaagtttcagttgaaagcacatctttacttaaaaattcatgatttat 264
Query: 65 taaagtgtcattgtagaaatgacaagtatatttattccaatcaaaatcaaaatagatcca 124
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 265 taaagtgtcattgtagaaatgacaagtatatttatcccaatcaaaatcaaaatagatcca 324
Query: 125 ccttcttagtcaaaaagtccatgtccacatgacatgcttcacagtgtgtgagttaagatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccttcttagtcaaaaagtccatgtccacatgacatgcttcacagtgtgtgagttaagatg 384
Query: 185 aaaactccagataataaatggtgccaggtgtgtgtcaatgcttaattatcattcaagact 244
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 385 aaaactccagataataaatggtgccagatgtgtgtcaatgcttaattatcattcaagact 444
Query: 245 attttattttaactgccaagatatttttcttttggggtttgattcaagttctaagactgt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attttattttaactgccaagatatttttcttttggggtttgattcaagttctaagactgt 504
Query: 305 ctgtgttaaggatcatcatgaaaatactttgcattcccagtatcccgacctgacagagaa 364
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 505 ctttgttaaggatcatcatgaaaatactttgcattcccagtatccctacctgacagagaa 564
Query: 365 gcatctgcctacacttgcagatacaactgcctaaccatttatttaatgacattctctccc 424
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 565 gcatctgcctacacttgcagatacagctgcctaaccatttatttaatgatgttctctccc 624
Query: 425 ttgttatcagatactagcttacatatcacacataggtactaaacccagtggttgattaca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgttatcagatactagcttacatatcacacataggtactaaacccagtggttgattaca 684
Query: 485 ggttatttggacaccttagtcatctgtgttctacgggtataaattccttctatagttctt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggttatttggacaccttagtcatctgtgttctacgggtataaattccttctatagttctt 744
Query: 545 aatagagaaagatttaaatatttgactggtaaaaggagtattgtgatatttttt-ctatc 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 745 aatagagaaagatttaaatatttgactggtaaaaggagtattgtgatatttttttctatc 804
Query: 604 atagactatctattgagtccattcaatgttgattgtatgtacacgtgaccatttgatatt 663
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atagactacctattgagtccattcaatgttgattgtatgtacacgtgaccatttgatatt 864
Query: 664 ttacaatttatcataaattatgtccaaaggaaacagattattcccctcagcagctgttgg 723
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 865 ttacaatttatcatagattatgtccaaaggaaacagattattcccctcagcagctcttgg 924
Query: 724 gttgtctgttgctctacatctatggttggcca 755
||||||||| |||||||||||||||||||||
Sbjct: 925 gttgtctgtcactctacatctatggttggcca 956
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 755
Length of database: 1156
Length adjustment: 10
Effective length of query: 745
Effective length of database: 1146
Effective search space: 853770
Effective search space used: 853770
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_n16.g1 MSMg01no122_n16.g1 CHROMAT_FILE:
MSMg01no122_n16.g1 PHD_FILE: MSMg01no122_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:48 2005
(671 letters)
>mm_chr16_53832882_53833952
Length = 1071
Score = 853 bits (441), Expect = 0.0
Identities = 471/483 (97%), Gaps = 4/483 (0%)
Strand = Plus / Minus
Query: 4 aggtaaggaatgataattagaattattattttgttgatcatatgtatcagaagaggtggc 63
|||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct: 808 aggtaaggaatgataattagaattattaatttgttgagcatatctatcagaagaggtggc 749
Query: 64 tggattttattactttgtgttttcatgtataccgaaacaattatttatttgtttgtttgt 123
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 748 tggattttattactttgtgttttcatgtataccgaaac----atttatttgtttgtttgt 693
Query: 124 ttgtttactagctttcactgggataaataatataacttgattaagtgcagcaattttgca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 692 ttgtttactagctttcactgggataaataatataacttgattaagtgcagcaattttcca 633
Query: 184 tagccaaaatatgttttcattaaattgcacagggcagttgcatatgttaatggaatttaa 243
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 632 tagccaaaatatgttttcattaaatttcacagtgcagttgcatatgttaatggaatttaa 573
Query: 244 tgtgattttgaccaccttttatgtcggatcaggaagtggagttttctttttgatttttta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tgtgattttgaccaccttttatgtcggatcaggaagtggagttttctttttgatttttta 513
Query: 304 aaattatctttacttggttttatgtagacacagtcacctgcaatatatttcatgtgatat 363
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aaattatatttacttggttttatgtagacacagtcacctgcaatatatttcatgtgatat 453
Query: 364 catattaattctgtactcaatgaatgagttcagtaggtctcaattttttggaaaaattag 423
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 452 catattaattctgtactcaatgaatgagttcagtaggtctcaattttctggaaaaattag 393
Query: 424 aatcactaatattatccttaaatatttaattaaatctcacagtaaaatcttgtcagctca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aatcactaatattatccttaaatatttaattaaatctcacagtaaaatcttgtcagctca 333
Query: 484 cac 486
|||
Sbjct: 332 cac 330
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
