BAC Information

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BAC

Clone NameMSMg01-123A12
Chromosome16 (Build37)
Map Location 73,728,127 - 73,819,248
singlet/doubletdoublet
Overlap genenone
Upstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
Downstream geneRobo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123A12.T7 (MSMg01no123_a12.b1)MSMg01-123A12.TJ (MSMg01no123_a12.g1)
ACCAG332741AG332742
length1,2651,181
length of high quality
(start - end)
419 (49 - 467)652 (127 - 778)
definitionCHROMAT_FILE: MSMg01no123_a12.b1 PHD_FILE: MSMg01no123_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:11 2005CHROMAT_FILE: MSMg01no123_a12.g1 PHD_FILE: MSMg01no123_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,818,841 - 73,819,248)(73,728,127 - 73,728,778)
sequence
NNAAGTTTTNNNNNNNGATCACTGCGCGCTATAGACTCCTATANGGAGAG
GATCCGCGGAATTCCATTAGTAAATACATTTACTTTGCTCTCTACCTTTT
CCTTTATTTAATGGTATGGATTGCAAAAAAAAATCTTGGCCTGGGAACCC
TGGCATTTCTGTCCGTTATAAAATGTGCTATTCAGGGAAGCCATGCCACC
AAATGAAAGCAGAGGCTTTGAAAATGAAGGAAGGGTGGCAGAGGTCAAGG
GCTTGGGAAACCTCTGGGGTGATGTCTTTATGATTCAGGAACCAGTTGCA
GGAAGTGTACCAGCACATGTAAAGCAATGGTTACCATATTGAATGCAGTA
AAGTTGAGTTTGTGCTGTCTGTTGGATGATTTGTCGGTATTGTACCATGC
CATAGGGAAACCTTTTAATCCAAACATGACTTACCTTCATTCTCTGACAA
CTTGAGAAAGTTCATTTTCTTAGGACACATGTTGGTGATGATTATGAATA
CATGAGAAATAATATTCATAAACAGCAGCCTCAAAAAATAATAAAAGCAG
GAACTTGGCCCCAAAATTTCAAAACCAATCTCCAGCTTACTCTTTCTCAT
ACTTCAGAACTCTCTGCAACATAAAATCTTTTAACTTATACAATTTAACT
TGAAAATCTGTTTTATGATGTGTCCATCCAGATAAAAGCATCTAGAATTA
AATTCATGTGACATTGTCACATGTATTAGGAAGCATACAATACATCACAA
ACATCTGTTGGAACTGTCCTAAGTATATGTGTCTATTTATCATTGTTTGA
TAACATACCATATTAACTGAGCATTATATCAGATGTTTATAGTTCTAGAA
ATCAGGAAACTGAGTCAGGGAAGATTGCAGTGAGTTACTTATCCTGACCT
ACCTAGTGAGTTCAAAGCCAGCCTTGAAATACTAAACCAAATTCTCTCTC
TAATTCCCCACTCTCCGCATAAAATAAAGAATTGGCATCAAACCTAATCG
ACTTAACGTTGTAATAATTAATCTAACTTTCCCATATGTTTTGTTCCTTT
GGAAACCAAATGTTTTCCCCTTTTTAAAATCCGGAATTTCACATATTTTA
TCTATTCAAAAATACCCCTCTCCCTTTTTATTCCTCGAACATTCCCTTTT
ACCCCTTAATAAACCCCTTTTTCTCTTCAAAATAAATATTTCTCCCTTTC
TCCTCTTCAATATATACCTTTTTTATTTTCTTCCTTGCTCTCTTCACATA
TTTCTCTTCTTTTTC
CAATTATTTNNNNACTTGCAGTGAGGCGTGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAACACCTTGTCAGGCAACT
CTCATTTGTGGGTATCTCCAGATCTAGAAGCAACAAAGCTTTCCTTTGGC
TTCTGCAGACATCCACCCTCATGTGCACACTTCCATATATAAATTAAGTT
AATTAAAATTATATGTATATAAAGAAAACAACCATGTTCCAGGAGTGGAA
TGAGAAGCAGCATCCAAGAGTAGAATAGAATGAAATGAGCAAGGATTATG
AAGGGAAAACATTATTTCCCCAAATCTGTTAGATTTCCGAAATGATGAGC
AGAGAAAAGCTGTTCTTATAGTTCTTGTGTGTCTTTTAAAATTCTCTTGA
ATGTAATCAGTATCCTTGGAAGATGTGGCATTTCTTGGTTTCATGGGATG
GGACTTATTTTTAATAAACTCTGGCTTACAACATCTTCATATGTTCTCAT
AGCATATCATATGCAGAATCAATAAAAATGAGTTCACCCAAATTTTNAAT
GTTGTTCAGGCAATTTATTTGCTACTAAAATTGTAAAAGTCAATACAGAA
ACTGGAGAAATGGAGTCATGTTATCTTAATAACTCTTTCAGTATGAGGAG
AATACGTATAATGAAGAACACATGTTGACTGGATGGTATGACATAGAGTA
GTGCAGTTATAGATAAAGCAGAATGCAGGATTGATACCAGATGTTGACTC
ACTTCAGGATTCATAAGCAAGGGCAGATCCTTCAGGAAGTGCGCAGCAAG
GTAACCAGGCGCTGCTACCGGGAGCTCTCTACACAAGTGTTGTTACTTTC
TAACAAGAAATTGCCATGTGTTCTTAAGGTTTAAAACCCCCCACAGGTGA
AACATTTCAGGGGAAAAAAAAAGATTTAGAAGTTACGTTCCATTTACCCA
TAATTTTTTAAGTTAATAATTCCCCAAAGTGGTAAAAATTTGTACCAAAC
TTAACTTTTTCCGAAATCCCCTCCTTTGGAAAAAAAAAAAAAAGTCCAGT
TTAATCCTTGGCCCCCCATAAGGATCCCTTTAAGGGTCCAGAATGAAAAA
CCTGGGAAAAGGTTCTTTTCTCTCCCACGGAAAACCTTTATCTAAGGGTT
TTCTCTTGGCCAAAAATATTCTTAAAAAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_a12.b1 MSMg01no123_a12.b1 CHROMAT_FILE:
MSMg01no123_a12.b1 PHD_FILE: MSMg01no123_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:11 2005
         (419 letters)



>mm_chr16_73818631_73819449
          Length = 819

 Score =  735 bits (380), Expect = 0.0
 Identities = 401/408 (98%)
 Strand = Plus / Minus

                                                                       
Query: 11  gaattccattagtaaatacatttactttgctctctaccttttcctttatttaatggtatg 70
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 618 gaattccattagtaaatacatttaccctgctctctaccttttcctttatttaatggtatg 559

                                                                       
Query: 71  gattgcaaaaaaaaatcttggcctgggaaccctggcatttctgtccgttataaaatgtgc 130
           ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 558 gattggaaaaaaaaatcttggcctgggaaccctggcatttctgtccattataaaatgtgc 499

                                                                       
Query: 131 tattcagggaagccatgccaccaaatgaaagcagaggctttgaaaatgaaggaagggtgg 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tattcagggaagccatgccaccaaatgaaagcagaggctttgaaaatgaaggaagggtgg 439

                                                                       
Query: 191 cagaggtcaagggcttgggaaacctctggggtgatgtctttatgattcaggaaccagttg 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cagaggtcaagggcttgggaaacctctggggtgatgtctttatgattcaggaaccagttg 379

                                                                       
Query: 251 caggaagtgtaccagcacatgtaaagcaatggttaccatattgaatgcagtaaagttgag 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 caggaagtgtaccagcacatgtaaagcaatggttaccatattgaatgcagtaaagttgag 319

                                                                       
Query: 311 tttgtgctgtctgttggatgatttgtcggtattgtaccatgccatagggaaaccttttaa 370
           ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct: 318 tttgtgctgtctgttggatgatttgtcagtattttaccatgccatagggaaacctttgaa 259

                                                           
Query: 371 tccaaacatgacttaccttcattctctgacaacttgagaaagttcatt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tccaaacatgacttaccttcattctctgacaacttgagaaagttcatt 211


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no123_a12.g1 MSMg01no123_a12.g1 CHROMAT_FILE:
MSMg01no123_a12.g1 PHD_FILE: MSMg01no123_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:11 2005
         (652 letters)



>mm_chr16_73727927_73728978
          Length = 1052

 Score = 1216 bits (629), Expect = 0.0
 Identities = 646/652 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagcaacaaagctttcctttggcttctgcagacatccaccctcatgtgcacacttccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagcaacaaagctttcctttggcttctgcagacatccaccctcatgtgcacacttccat 260

                                                                       
Query: 61  atataaattaagttaattaaaattatatgtatataaagaaaacaaccatgttccaggagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atataaattaagttaattaaaattatatgtatataaagaaaacaaccatgttccaggagt 320

                                                                       
Query: 121 ggaatgagaagcagcatccaagagtagaatagaatgaaatgagcaaggattatgaaggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaatgagaagcagcatccaagagtagaatagaatgaaatgagcaaggattatgaaggga 380

                                                                       
Query: 181 aaacattatttccccaaatctgttagatttccgaaatgatgagcagagaaaagctgttct 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacattatttccccaactctgttagatttccgaaatgatgagcagagaaaagctgttct 440

                                                                       
Query: 241 tatagttcttgtgtgtcttttaaaattctcttgaatgtaatcagtatccttggaagatgt 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 tatagttcttgtgtgtcttttaaaattctcttgaatgtaatcagtagccttggaagatgt 500

                                                                       
Query: 301 ggcatttcttggtttcatgggatgggacttatttttaataaactctggcttacaacatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcatttcttggtttcatgggatgggacttatttttaataaactctggcttacaacatct 560

                                                                       
Query: 361 tcatatgttctcatagcatatcatatgcagaatcaataaaaatgagttcacccaaatttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatatgttctcatagcatatcatatgcagaatcaataaaaatgagttcacccaaatttt 620

                                                                       
Query: 421 naatgttgttcaggcaatttatttgctactaaaattgtaaaagtcaatacagaaactgga 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 taatgttgttcaggcaatttatttgctactaaaattgtaaaagtcaatacagaaactgaa 680

                                                                       
Query: 481 gaaatggagtcatgttatcttaataactctttcagtatgaggagaatacgtataatgaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaatggagtcatgttatcttaataactctttcagtatgaggagaatacgtataatgaag 740

                                                                       
Query: 541 aacacatgttgactggatggtatgacatagagtagtgcagttatagataaagcagaatgc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacacatgttgactggatggtatgacatagagtagtgcagttatagataaagcagaatgc 800

                                                               
Query: 601 aggattgataccagatgttgactcacttcaggattcataagcaagggcagat 652
           ||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 801 aggattggtaccagatgttgactcacttcaggattcgtaagcaagggcagat 852


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)