MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-123B09
Chromosome	16 (Build37)
Map Location	15,148,399 - 15,338,973
singlet/doublet	doublet
Overlap gene	LOC665653, LOC385748, LOC100042743
Upstream gene	4921513D23Rik, Nde1, Myh11, 0610037P05Rik, Abcc1, Gm1758, Snai2, Efcab1, LOC100042737
Downstream gene	LOC547302, EG632352, Ube2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l
Link	Open Mouse BAC browser

Click to get alignment info.

name	4921513D23Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:223989 MGI:2444505
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nde1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67203 MGI:1914453
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Myh11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17880 MGI:102643
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	0610037P05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66086 MGI:1913336
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Abcc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17250 MGI:102676
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm1758 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:385737 MGI:2686604
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	Snai2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20583 MGI:1096393
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Efcab1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66793 MGI:1914043
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042737 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042737
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 7 Proteins pseudo : _no_value

name	LOC665653 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665653
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC385748 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:385748
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins pseudo : _no_value

name	LOC100042743 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042743
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC547302 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:547302
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	EG632352 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:632352 MGI:3642962
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 245 ESTs, 10 Proteins pseudo : _no_value

name	Ube2v2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70620 MGI:1917870
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665682 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665682
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 119 ESTs, 3 Proteins pseudo : _no_value

name	Mcm4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17217 MGI:103199
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prkdc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19090 MGI:104779
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2410018G20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72083 MGI:1922845
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cebpd (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12609 MGI:103573
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2310008H04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:224008 MGI:1924834
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043266 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043266
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 310 ESTs, 10 Proteins

name	LOC224010 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:224010
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	D16Ertd727e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:623331 MGI:1289219
definition	note : DNA segment, Chr 16, ERATO Doi 727, expressed pseudo : _no_value

name	Pkp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67451 MGI:1914701
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG433003 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433003 MGI:3648103
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 302 ESTs, 7 Proteins

name	Yars2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70120 MGI:1917370
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dnm1l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74006 MGI:1921256
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	4921513D23Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487212 GeneID:223989 MGI:2444505
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4921513D23 gene transcript_id : NM_001081154.1

name	Nde1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:12963634 GeneID:67203 MGI:1914453
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear distribution gene E homolog 1 (A nidulans) transcript_id : NM_023317.1

name	Myh11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7305294 GeneID:17880 MGI:102643
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myosin, heavy polypeptide 11, smooth muscle transcript_id : NM_013607.1

name	0610037P05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560259 GeneID:66086 MGI:1913336
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 0610037P05 gene transcript_id : NM_025345.2

name	Abcc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:60218873 GeneID:17250 MGI:102676
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP-binding cassette, sub-family C (CFTR/MRP), member 1 transcript_id : NM_008576.2

name	Gm1758 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94400074 GeneID:385737 MGI:2686604
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : gene model 1758, (NCBI) transcript_id : XM_358926.5

name	Snai2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42476308 GeneID:20583 MGI:1096393
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : snail homolog 2 (Drosophila) transcript_id : NM_011415.2

name	Efcab1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142382593 GeneID:66793 MGI:1914043
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : EF hand calcium binding domain 1 transcript_id : NM_025769.2

name	Ube2v2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802283 GeneID:70620 MGI:1917870
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin-conjugating enzyme E2 variant 2 transcript_id : NM_023585.3

name	Mcm4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982196 GeneID:17217 MGI:103199
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : minichromosome maintenance deficient 4 homolog (S. cerevisiae) transcript_id : NM_008565.2

name	Prkdc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124517705 GeneID:19090 MGI:104779
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase, DNA activated, catalytic polypeptide transcript_id : NM_011159.2

name	2410018G20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801811 GeneID:72083 MGI:1922845
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2410018G20 gene transcript_id : NM_029354.2

name	Cebpd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110665734 GeneID:12609 MGI:103573
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CCAAT/enhancer binding protein (C/EBP), delta transcript_id : NM_007679.4

name	2310008H04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801762 GeneID:224008 MGI:1924834
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2310008H04 gene transcript_id : NM_146068.3

name	LOC100043266 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149267400 GeneID:100043266
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 310 ESTs, 10 Proteins product : similar to cytochrome c transcript_id : XM_001480401.1

name	Pkp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142349260 GeneID:67451 MGI:1914701
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : plakophilin 2 transcript_id : NM_026163.2

name	EG433003 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149267402 GeneID:433003 MGI:3648103
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 302 ESTs, 7 Proteins product : predicted gene, EG433003 transcript_id : XM_484529.5

name	Yars2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:39930578 GeneID:70120 MGI:1917370
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tyrosyl-tRNA synthetase 2 (mitochondrial) transcript_id : NM_198246.1

name	Dnm1l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71061454 GeneID:74006 MGI:1921256
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dynamin 1-like transcript_id : NM_001025947.1

name	Dnm1l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71061457 GeneID:74006 MGI:1921256
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dynamin 1-like transcript_id : NM_152816.2

name	4921513D23Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487213 GeneID:223989 MGI:2444505
definition	GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] codon_start : 1 note : limkain b1 product : hypothetical protein LOC223989 protein_id : NP_001074623.1

name	Nde1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12963635 GeneID:67203 MGI:1914453
definition	GO_component : GO:0005813 - centrosome [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA]; GO:0005819 - spindle [Evidence IDA]; GO:0031616 - spindle pole centrosome [Evidence IDA] GO_function : GO:0042802 - identical protein binding [Evidence IPI]; GO:0008017 - microtubule binding [Evidence IMP] [Evidence IDA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0051298 - centrosome duplication [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0030900 - forebrain development [Evidence IMP]; GO:0007020 - microtubule nucleation [Evidence IDA]; GO:0007067 - mitosis [Evidence IEA]; GO:0051227 - mitotic spindle assembly [Evidence IMP]; GO:0007399 - nervous system development [Evidence IEA]; GO:0007405 - neuroblast proliferation [Evidence IMP]; GO:0047496 - vesicle transport along microtubule [Evidence IGI] codon_start : 1 product : nuclear distribution gene E homolog 1 protein_id : NP_075806.1

name	Myh11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305295 CCDS:CCDS27972.1 GeneID:17880 MGI:102643
definition	GO_component : GO:0005859 - muscle myosin [Evidence IDA]; GO:0016459 - myosin [Evidence IEA]; GO:0005863 - striated muscle thick filament [Evidence IEA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0005516 - calmodulin binding [Evidence IEA]; GO:0003774 - motor activity [Evidence IMP]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007010 - cytoskeleton organization and biogenesis [Evidence IEA]; GO:0006939 - smooth muscle contraction [Evidence IMP]; GO:0006941 - striated muscle contraction [Evidence IEA] codon_start : 1 exception : mismatches in translation note : myosin heavy chain 11, smooth muscle product : myosin, heavy polypeptide 11, smooth muscle protein_id : NP_038635.1

name	0610037P05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313614 CCDS:CCDS27973.1 GeneID:66086 MGI:1913336
definition	codon_start : 1 product : hypothetical protein LOC66086 protein_id : NP_079621.1

name	Abcc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678848 GeneID:17250 MGI:102676
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence IEA]; GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA] codon_start : 1 note : multiple drug resistance-associated protein; ATP-binding cassette, sub-family C (CFTR/MRP), member 1b; ATP-binding cassette, sub-family C (CFTR/MRP), member 1a product : ATP-binding cassette, sub-family C, member 1 protein_id : NP_032602.1

name	Gm1758 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94400075 GeneID:385737 MGI:2686604
definition	codon_start : 1 product : hypothetical protein protein_id : XP_358926.5

name	Snai2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755576 CCDS:CCDS27974.1 GeneID:20583 MGI:1096393
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0045884 - regulation of survival gene product activity [Evidence IC]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0009314 - response to radiation [Evidence IDA] [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : slug, chicken homolog product : snail homolog 2 protein_id : NP_035545.1

name	Efcab1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313314 CCDS:CCDS27975.1 GeneID:66793 MGI:1914043
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA] codon_start : 1 product : EF hand calcium binding domain 1 protein_id : NP_080045.1

name	Ube2v2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543918 GeneID:70620 MGI:1917870
definition	GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IEA] GO_process : GO:0006464 - protein modification [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : ubiquitin-conjugating enzyme E2 variant 2 protein_id : NP_076074.2

name	Mcm4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982197 CCDS:CCDS27977.1 GeneID:17217 MGI:103199
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IPI]; GO:0008094 - DNA-dependent ATPase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003697 - single-stranded DNA binding [Evidence IPI] GO_process : GO:0006260 - DNA replication [Evidence IEA]; GO:0006270 - DNA replication initiation [Evidence IEA]; GO:0006268 - DNA unwinding during replication [Evidence IPI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : Mcm4(cdc21); mini chromosome maintenance deficient 4 homolog product : minichromosome maintenance complex component 4 protein_id : NP_032591.2

name	Prkdc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124517706 CCDS:CCDS27978.1 GeneID:19090 MGI:104779
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0005488 - binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004677 - DNA-dependent protein kinase activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IMP]; GO:0007420 - brain development [Evidence IGI]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006302 - double-strand break repair [Evidence IMP]; GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]; GO:0007507 - heart development [Evidence IGI]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]; GO:0001756 - somitogenesis [Evidence IGI]; GO:0000723 - telomere maintenance [Evidence IMP] codon_start : 1 note : DNA-dependent protein kinase catalytic subunit; severe combined immunodeficiency product : protein kinase, DNA activated, catalytic polypeptide protein_id : NP_035289.2

name	2410018G20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312988 CCDS:CCDS27979.1 GeneID:72083 MGI:1922845
definition	codon_start : 1 product : hypothetical protein LOC72083 protein_id : NP_083630.1

name	Cebpd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110347410 GeneID:12609 MGI:103573
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0046982 - protein heterodimerization activity [Evidence IDA]; GO:0042803 - protein homodimerization activity [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : CCAAT/enhancer binding protein delta protein_id : NP_031705.3

name	2310008H04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31541868 CCDS:CCDS27980.1 GeneID:224008 MGI:1924834
definition	codon_start : 1 product : hypothetical protein LOC224008 protein_id : NP_666180.2

name	LOC100043266 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149267401 GeneID:100043266
definition	codon_start : 1 product : similar to cytochrome c protein_id : XP_001480451.1

name	Pkp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312960 CCDS:CCDS27981.1 GeneID:67451 MGI:1914701
definition	GO_component : GO:0005912 - adherens junction [Evidence IMP] GO_function : GO:0005488 - binding [Evidence IEA] GO_process : GO:0016337 - cell-cell adhesion [Evidence IMP]; GO:0007507 - heart development [Evidence IMP] codon_start : 1 product : plakophilin 2 protein_id : NP_080439.1

name	EG433003 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51829956 GeneID:433003 MGI:3648103
definition	codon_start : 1 product : similar to ribosomal protein L30 protein_id : XP_484529.1

name	Yars2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39930579 CCDS:CCDS27983.1 GeneID:70120 MGI:1917370
definition	GO_component : GO:0005739 - mitochondrion [Evidence ISS] [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004831 - tyrosine-tRNA ligase activity [Evidence ISS] GO_process : GO:0006412 - protein biosynthesis [Evidence ISS] [Evidence IEA] codon_start : 1 product : tyrosyl-tRNA synthetase 2 (mitochondrial) protein_id : NP_937889.1

name	Dnm1l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71061455 CCDS:CCDS27984.1 GeneID:74006 MGI:1921256
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : dynamin 1-like isoform b protein_id : NP_001021118.1

name	Dnm1l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71061458 CCDS:CCDS27985.1 GeneID:74006 MGI:1921256
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1 product : dynamin 1-like isoform a protein_id : NP_690029.2

name	LOC665653 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665653
definition	number : 1 pseudo : _no_value

name	LOC385748 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:385748
definition	number : 1 pseudo : _no_value

name	LOC385748 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:385748
definition	number : 2 pseudo : _no_value

name	LOC385748 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:385748
definition	number : 3 pseudo : _no_value

name	LOC100042743 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042743
definition	number : 2 pseudo : _no_value

name	LOC100042743 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042743
definition	number : 1 pseudo : _no_value

name	LOC547302 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:547302
definition	number : 1 pseudo : _no_value

name	LOC224010 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:224010
definition	number : 1 pseudo : _no_value

name	LOC100042737 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149267282 GeneID:100042737
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 7 Proteins product : similar to 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor) pseudo : _no_value transcript_id : XR_033852.1

name	EG632352 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:94400078 GeneID:632352 MGI:3642962
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 245 ESTs, 10 Proteins product : predicted gene, EG632352 pseudo : _no_value transcript_id : XR_001767.1

name	LOC665682 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149267395 GeneID:665682
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 119 ESTs, 3 Proteins product : similar to Translocase of outer mitochondrial membrane 20 homolog (yeast) pseudo : _no_value transcript_id : XR_034669.1

clone name	MSMg01-361H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153J08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-338M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-134K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518D18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450J08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-141O15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-449D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-081P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332E19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-401P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-185N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-152O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279G16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-144F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-466C04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-533D12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-120N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-280L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380N21
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-311H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-264N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095G18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-081D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-121I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-131N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-483B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-089D23
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-233O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311A05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245A03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287E16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-215O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-177P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265E15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-104H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096B15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-294P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-033F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-295G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332H23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-334K12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207H18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164I07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184A11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-069B05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-088F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027E15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347P15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-264A02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-242N10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-122F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006K04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-213H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232D09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-169E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-008D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184J13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-171N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317I15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-272F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052D16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-316M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-208J18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004I10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-090E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-298H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-250O05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-339O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256M19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006H16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-332E02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-163O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146P18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309H08
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-123B09.T7 (MSMg01no123_b09.b1)	MSMg01-123B09.TJ (MSMg01no123_b09.g1)
ACC	AG332783	AG332784
length	1,164	1,243
length of high quality (start - end)	283 (86 - 368)	329 (128 - 456)
definition	CHROMAT_FILE: MSMg01no123_b09.b1 PHD_FILE: MSMg01no123_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:19 2005	CHROMAT_FILE: MSMg01no123_b09.g1 PHD_FILE: MSMg01no123_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:19 2005
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(15,148,399 - 15,148,679)	(15,338,645 - 15,338,973)
sequence	AGTTCTATNNNNCGTCATTCGGCGCTATAGANTCCTATAGGGAGAGGATC CGCGGAATTCCTATTGTGCTAGGCCATTCCGTTGGTGATTCATTCAGTTA CAGATAACTAGTGCAGAATCCCTGTCCAAACACTAGAGTACTTTCTTTGC CTTTACCTATGCAGACAGTCATGGAAGTAATTATGATATTCTCACTTGAT GTTCTAAGCAATGCTAAGACACAGCTTCCTGTAGGGACAACACATGGACA CCAAAGCCCTGCTCCAAGTACTCAGAGCAGAATCCCAAGAGCCAGAGTGT GCTGAATTGCTACTGAGTAAGCACCTTTCTAGGTATACTATATGCTATAT AACTTAATCCTTTGGCAGCTACAGTGCCTGCTTGTCAACCTGCTGATGCT GTAGTGCGCACTGTTTTTCTTAGCAAGAAGCCGCCTTCCCTGCTGGACCA GAATTCCATTTCCTTTTTTTTTTCCCCCCCCTTCTATAGTACCCCCCTTC CCCAAAAAAAAAGGGGGGTCATAATTTCTTACAAACTCACATCATAGATT TTTTTGTCCCTTACTTATCATACCCCTAGGCTTTATTGCCCACTCCTGAC TCTTGTTTCCCCTTCCCCGTATAATATTCTATGCTTCAAATTCCCCTCCC CCTCTCTCTTGCACACATTACTACTCCCCCCTCCTTTTCCTGTTCTCTCT TCTTGTATATCCTTCCTCTCTTTTCCTCAACTCTCCCACTCCCTTGTCCT ATTTGTTTTGCATCCTCTTTTTTCTCCTCAACCACCCCTATTCTCGACTT ACTATACCCTTCCTTTTCCTTCTCCTTCTTTCCTTACTTCCATCTCCACT TCTCCTCTCCCCTTCTCTCATCCTTTCTCTCTCTCACCTTTCCTTCCCTT TTTCTCATCTTTTTCCCTTCTTTTCTCCCTCCCCTTTCCTTTTTTACCAT TTCTTTTTCCCCCATCCCCTCCCTTCCTTCCTTTCCTCCCCTTTCCTTCT TCTTCTTCTTCTCTTTCCTTTCCCCCTTTCTTTCTCCTTCTCCTCCTTTC TTCTCTTCATTTTCCCCCTCTCCTCTTCCTCTCTCTCCCCTCTCCTTTCC TTTTTCCTTCTACTCTCTTTACCTCCTACCTTCTCTCTTCTCTTCCCTAT TCTTTTCTCTCTCC	NAAATTATAGCACGCGATGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXCCCTTTTGAAAGATCCAGGCTAATGTTCT GTACAGAATGATGCCTTAAATGTCCCTGTGGGTATGACTTGCGAATAAGC TCTTGCTAAATGCTAGGTTTCCTTCATTAATTAAGGAGGGATAGAGAGAG TATATACACTCCATGTGGATTCCTTTACTGCCTAGTACACTAAAAGTTTA TAGTGATCAAGTTTTGTGCAAATGTTCTCTGTAAGAACATTTCTGCTTCA CTGAGAAGGTGAGGTGATAACTGATTTGACTGCTGAAAATGAGCCTGAAG AAAGGGAGGTCCTAAAATCATACCAGGAACATGAGTTGAGAAAAGTTTTG TCTGTGTGGAGTAGAACCATATACATAAGAAATTGACTATAGTTTTTGAG GTATATGCATTACATATTTGGAGTACTTAATTTTGATCTACCCATTGCCT CTGACCACTGTGGTGCATCATACATATAGTTTGACTGCCCATGCTGTGTC TCTTGATGTACTGTTCCAAAAAAGAGCATATGTACATCTACTTATAGCCA TGCAATTGTTGGGCCTCACCACCTAAGGGACAACAACATCCATAGTGGGG AAGACCTGTAGCAGCCCTCAGGAACATAATACAAACTATCATGAAAGGAA TGTGATAATCCATTATAAACCACTAAGTTACTTATAACTACGGCTAGAAC AAATGAACCAAATTCAACTGCTTTGATAAAGATCATTAAATATGAATGGA GCATAGTCTAAGTTGAAGATAAGAGAGAGTGACCTTATTAAGGCCAGACT AGATGTTAGTATTAGGGCTCATTTTGGCGACCCCACCTGGATTTTCACTG CACCTTCCACTAAAATGACAACTGATGGTCAATTATTACCCCTACTTAAC GGAACACTCCCTATATACATTTGAAATCCTCTTTCAAAACTTAACAAAAT TAAAGTCTTACAACACAAATCAATTTTTTTTACTAAAAAAAATACCCTTT TTTTTTATTATTATGAATTGTTAATTTTCCCCCAGCTTTTTCCCTTTCTT TTTTTACCCGTTCGATAAAATCCTCCCAAAAACTATGCATCTACCTTGTG CGCTGTTTTTAATGGTCACTTTGTGCCCAAAAAGCTCTCTTTTAAAATCC CTGTGCATATATGCTCCCTATAAATCCTCTCCNCTCCTTCTTA
quality values	Open. Hide. 6 6 6 6 6 6 6 3 0 0 0 0 3 9 9 9 9 9 9 11 12 12 14 12 12 9 6 6 6 8 3 0 3 9 9 13 19 24 24 28 30 29 28 29 28 28 28 28 24 24 25 23 23 23 23 37 40 40 57 57 39 39 39 36 36 32 32 28 29 33 33 33 19 19 14 23 18 21 9 9 9 10 15 16 14 14 23 28 37 39 35 35 35 39 39 37 36 36 36 40 40 40 40 43 43 43 42 39 36 42 36 42 43 43 43 37 31 21 18 15 15 14 16 13 13 23 23 39 29 32 19 19 15 27 18 28 22 23 23 37 43 57 57 57 47 47 42 42 37 43 39 43 43 50 42 48 35 35 32 38 32 48 44 44 43 43 37 37 36 36 41 41 47 50 57 52 52 52 52 57 57 57 57 57 52 52 52 57 43 43 32 32 23 23 23 32 26 38 38 43 43 35 35 37 43 43 35 35 31 33 33 44 43 52 43 44 38 38 17 23 23 43 43 37 37 35 43 43 57 57 57 57 52 32 32 23 23 29 43 43 43 43 37 50 37 37 38 38 50 37 37 35 37 37 41 43 52 42 43 38 24 15 15 32 32 32 37 43 50 44 50 32 32 20 20 18 30 30 20 20 28 32 24 31 28 20 20 20 32 27 25 25 28 28 36 40 28 28 23 25 25 30 30 39 41 43 37 39 39 37 37 32 32 30 30 30 30 30 19 10 10 18 19 26 34 43 43 27 24 12 12 12 23 23 30 21 19 23 28 32 33 37 37 33 33 33 33 33 41 22 17 8 7 7 15 15 37 39 59 39 35 34 28 18 14 18 15 21 18 22 25 16 16 15 15 12 14 15 24 32 39 39 37 32 23 23 23 23 23 28 32 37 37 35 32 32 30 30 24 24 15 18 11 11 12 11 12 12 18 10 8 8 8 8 8 14 17 10 10 10 10 13 16 16 17 12 12 12 15 15 11 10 10 10 10 15 13 12 12 19 19 22 19 19 18 18 19 21 15 15 15 22 18 13 13 22 18 22 11 11 11 14 12 11 16 16 35 39 39 37 27 30 17 11 11 11 15 12 8 11 9 9 9 16 17 19 19 10 8 8 8 8 8 8 11 15 11 11 11 11 14 11 11 11 14 29 28 30 24 11 10 10 8 8 8 8 6 8 8 8 8 8 8 10 13 24 20 22 19 10 9 11 21 17 10 10 6 6 8 8 10 10 18 20 12 11 10 11 13 10 16 16 21 21 18 11 10 10 12 12 14 10 10 8 8 8 8 8 8 9 12 13 18 10 8 8 10 8 8 8 8 8 8 6 6 8 10 9 8 8 8 8 8 8 10 11 8 8 8 8 8 10 10 12 11 11 16 11 10 10 15 10 12 12 10 9 8 8 8 10 10 10 8 8 8 8 8 6 8 8 8 8 8 8 8 9 11 11 11 12 18 21 23 11 11 7 7 8 8 12 11 8 8 6 6 6 6 10 12 21 13 11 10 9 9 9 9 10 9 17 12 13 10 10 10 8 8 8 8 8 6 6 8 8 12 10 16 10 10 10 10 10 8 10 9 10 11 9 8 8 8 8 10 8 11 11 8 8 8 8 8 8 8 8 8 10 8 8 8 8 11 8 8 8 8 8 8 8 8 8 8 8 8 8 10 10 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 9 8 8 6 6 8 8 8 8 8 10 11 15 15 10 8 8 8 8 10 8 8 6 6 8 8 10 10 11 11 10 10 10 9 9 9 10 8 8 7 7 8 8 12 10 10 10 9 6 8 6 6 8 8 9 9 11 13 13 15 18 13 11 11 10 8 12 8 10 8 8 8 10 13 10 10 8 8 8 8 8 8 8 8 9 8 8 6 6 8 10 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 10 10 8 8 8 10 8 8 8 8 8 8 9 10 11 16 12 10 10 10 8 8 8 10 10 10 10 10 9 9 9 11 12 10 12 7 7 8 7 8 8 8 8 8 10 10 10 10 10 9 10 10 10 10 11 12 12 12 10 9 9 8 8 6 6 8 8 11 11 8 8 8 8 8 8 9 9 10 9 13 10 8 8 8 8 8 8 8 8 10 10 9 9 10 10 9 10 9 9 9 9 9 9 11 8 8 8 8 8 8 9 9 13 10 15 9 9 9 8 8 8 9 12 10 13 10 8 8 8 8 8 8 8 8 8 8 8 8 9 11 9 16 22 8 8 8 8 8 8 8 8 8 8 10 9 14 12 14 11 11 11 8 11 11 10 13 10 10 8 8 6 6 8 8 6 6 8 6 6 8 8 10 12 8 11 11 11 11 11 8 8 8 8 8 8 6 7 12 12 14 15 10 9 8 8 8 8 8 6 8 8 8 6 6 8 10 10 8 8 8 8 9 9 9 9 11 10 8 8 8 12 8 8 11 11 11 11 11 11 11 10 10 8 8 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 8 9 9 8 8 6 6 8 8 8 8 8 8 8 10 8 8 8 8 9 10 10 10 11 13 13 13 10 9 8 8 10 8 8 8 8	Open. Hide. 0 3 7 7 6 8 8 6 6 6 6 6 6 6 6 6 6 6 9 13 6 6 6 11 11 11 11 15 8 8 6 8 7 8 15 15 15 8 8 10 19 19 24 18 23 25 36 36 36 36 33 33 36 37 33 35 36 53 53 53 53 53 50 50 50 37 42 34 21 10 8 7 8 8 10 11 8 8 7 8 10 10 11 11 12 22 25 25 37 22 22 22 30 29 36 50 50 53 57 50 47 39 37 35 35 36 33 33 33 33 21 17 8 8 6 8 8 8 14 15 13 13 10 10 10 10 13 11 17 18 36 44 44 44 43 47 48 57 48 43 43 43 43 40 43 43 43 43 33 30 33 42 46 46 43 43 47 47 47 48 57 47 47 47 47 50 50 57 57 57 57 57 57 46 46 46 57 57 48 47 44 57 57 57 57 42 42 43 43 43 46 57 54 47 47 47 47 47 57 43 43 43 50 50 50 57 42 42 37 43 43 44 50 52 52 57 57 57 57 57 44 57 52 52 52 57 57 52 52 43 50 32 36 23 44 44 52 52 52 52 57 57 52 52 57 59 57 57 57 57 57 57 52 52 52 57 57 52 52 52 57 57 59 59 57 52 52 52 52 52 57 57 57 57 43 43 43 43 43 44 43 43 43 37 37 35 43 43 57 57 57 59 57 54 54 57 50 50 38 38 37 38 38 35 35 38 43 43 57 52 52 52 50 57 47 47 48 57 57 54 50 50 44 44 48 59 59 59 57 47 47 41 39 37 47 42 43 43 47 47 57 43 43 43 43 59 44 36 23 23 18 28 23 30 25 36 36 39 37 37 41 41 41 41 41 37 43 47 43 43 43 46 43 43 43 43 39 42 39 39 40 42 42 43 43 43 43 43 36 43 37 37 39 43 40 43 59 37 37 28 33 34 30 30 25 21 15 11 11 11 11 12 20 21 31 39 39 48 48 43 43 43 43 39 39 37 39 35 35 30 39 39 42 42 42 43 43 43 47 39 43 43 47 57 48 48 48 48 43 28 26 14 14 21 25 24 13 13 12 12 18 15 11 11 11 20 22 25 28 23 26 28 30 28 28 28 37 37 47 40 40 36 40 43 59 48 43 43 43 43 43 47 41 33 30 33 30 35 35 37 37 36 39 31 31 23 28 28 37 31 37 35 35 32 25 23 9 9 9 18 18 37 37 37 37 42 43 42 43 43 37 37 32 35 35 37 37 37 37 37 39 37 39 36 36 28 23 30 16 13 15 21 29 31 32 28 40 33 39 39 29 29 34 34 29 34 33 32 35 35 32 39 37 20 16 11 11 12 22 26 37 28 21 18 11 11 11 27 11 11 8 8 8 10 16 18 12 13 13 15 11 8 8 8 12 17 28 23 21 23 15 19 18 18 19 12 14 8 8 8 10 16 23 21 17 15 15 15 12 11 9 9 9 10 13 10 15 15 11 12 11 15 15 19 19 14 13 13 12 12 11 11 11 12 16 16 17 17 10 10 10 10 10 10 8 8 12 12 10 8 12 11 13 13 20 22 22 17 17 17 25 17 15 15 13 15 11 8 8 8 10 10 19 15 12 12 15 19 14 12 12 11 7 8 8 15 15 8 8 10 8 8 10 15 10 10 10 12 10 10 10 10 10 10 10 10 10 10 8 8 8 8 10 11 12 10 11 10 12 12 10 8 8 8 8 8 9 8 10 10 11 11 12 21 24 19 18 19 19 17 17 10 12 10 8 8 8 10 12 10 10 10 10 26 13 16 12 9 9 10 10 8 8 8 9 12 12 12 11 11 13 13 12 21 18 15 15 12 12 10 10 10 10 10 10 11 11 9 9 9 9 9 9 12 12 12 11 8 8 8 8 8 8 11 11 10 10 10 16 10 14 13 11 11 11 15 15 10 9 9 9 13 13 13 10 8 8 6 8 8 8 10 8 8 8 11 11 8 8 8 8 6 8 8 11 11 8 8 6 6 6 6 8 6 8 8 8 8 8 10 10 8 8 8 8 8 10 8 8 8 8 9 10 11 11 11 8 8 8 8 8 6 6 8 10 10 13 9 9 9 8 8 8 6 10 6 6 8 8 10 10 11 10 10 9 9 6 6 6 6 10 10 9 10 10 15 12 12 11 11 10 9 8 8 8 8 13 10 10 10 9 8 8 8 6 6 8 10 9 9 9 14 16 15 15 15 10 10 10 9 9 9 12 15 19 15 8 8 6 6 8 8 8 8 8 8 8 12 8 8 8 8 8 8 8 8 8 8 8 8 8 11 13 15 13 15 12 11 18 11 12 12 12 8 8 8 8 10 10 17 20 11 11 10 13 15 12 14 11 10 10 8 8 8 8 8 8 10 10 8 8 10 8 9 8 8 8 8 8 17 11 13 15 14 10 10 10 10 10 10 8 10 10 8 6 6 6 7 11 11 10 8 8 6 6 8 8 6 6 8 10 10 10 10 10 10 20 15 12 8 7 8 7 9 10 7 7 7 7 8 6 8 8 8 10 10 11 10 7 8 8 8 8 6 6 6 8 10 9 9 9 9 9 9 8 8 7 7 7 6 8 6 6 6 6 10 10 10 9 9 9 8 8 9 9 10 10 8 8 8 8 6 8 6 6 8 10 9 9 9 8 10 8 8 8 9 8 8 8 10 13 8 8 8 8 8 10 8 8 8 8 11 12 12 15 19 10 10 9 7 11 8 10 13 13 9 9 10 8 8 6 6 8 8 9 10 11 8 8 8 8 8 8 9 10 16 14 8 8 7 7 7 10 12 9 9 9 9 9 9 8 3 0 3 8 10 8 8 8 10 11 10 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no123_b09.b1 MSMg01no123_b09.b1 CHROMAT_FILE:
MSMg01no123_b09.b1 PHD_FILE: MSMg01no123_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:19 2005
         (283 letters)



>mm_chr16_15148197_15148879
          Length = 683

 Score =  513 bits (265), Expect = e-150
 Identities = 277/281 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   attcattcagttacagataactagtgcagaatccctgtccaaacactagagtactttctt 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 attcattcagttacagataactagtgcagaatccctgtccaaacactagagtactttctt 262

                                                                       
Query: 63  tgcctttacctatgcagacagtcatggaagtaattatgatattctcacttgatgttctaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgcctttacctatgcagacagtcatggaagtaattatgatattctcacttgatgttctaa 322

                                                                       
Query: 123 gcaatgctaagacacagcttcctgtagggacaacacatggacaccaaagccctgctccaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gcaatgctaagacacagcttcctgtagggacaacacatggacaccaaagccctgctccaa 382

                                                                       
Query: 183 gtactcagagcagaatcccaagagccagagtgtgctgaattgctactgagtaagcacctt 242
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 383 gtactcagagcagaatcccaagagccagaatgtgctgaattgctactgagtaagcacctt 442

                                                    
Query: 243 tctaggtatactatatgctatataacttaatcctttggcag 283
           ||||||||||||||||| ||||||| || ||||||||||||
Sbjct: 443 tctaggtatactatatgatatataatttgatcctttggcag 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no123_b09.g1 MSMg01no123_b09.g1 CHROMAT_FILE:
MSMg01no123_b09.g1 PHD_FILE: MSMg01no123_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:19 2005
         (329 letters)



>mm_chr16_15338445_15339173
          Length = 729

 Score =  621 bits (321), Expect = 0.0
 Identities = 327/329 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgggtatgacttgcgaataagctcttgctaaatgctaggtttccttcattaattaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gtgggtatgacttgcgaataagctcttgctaaatgctaggtttccttcattaattaagga 470

                                                                       
Query: 61  gggatagagagagtatatacactccatgtggattcctttactgcctagtacactaaaagt 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gggatagacagagtatatacactccatgtggattcctttactgcctagtacactaaaagt 410

                                                                       
Query: 121 ttatagtgatcaagttttgtgcaaatgttctctgtaagaacatttctgcttcactgagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ttatagtgatcaagttttgtgcaaatgttctctgtaagaacatttctgcttcactgagaa 350

                                                                       
Query: 181 ggtgaggtgataactgatttgactgctgaaaatgagcctgaagaaagggaggtcctaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ggtgaggtgataactgatttgactgctgaaaatgagcctgaagaaagggaggtcctaaaa 290

                                                                       
Query: 241 tcataccaggaacatgagttgagaaaagttttgtctgtgtggagtagaaccatatacata 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 289 tcataccaggaacatgagttgagaaaagttttgtctgtgaggagtagaaccatatacata 230

                                        
Query: 301 agaaattgactatagtttttgaggtatat 329
           |||||||||||||||||||||||||||||
Sbjct: 229 agaaattgactatagtttttgaggtatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information