BAC Information

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BAC

Clone NameMSMg01-123C15
Chromosome16 (Build37)
Map Location 51,117,143 - 51,117,729
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043404, Bbx, LOC100043414, Ccdc54, LOC672778, 5330426P16Rik, EG639820
Downstream geneLOC627543, Cblb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123C15.T7 (MSMg01no123_c15.b1)MSMg01-123C15.TJ (MSMg01no123_c15.g1)
ACCAG332842AG332843
length1,2561,267
length of high quality
(start - end)
327 (126 - 452)596 (123 - 718)
definitionCHROMAT_FILE: MSMg01no123_c15.b1 PHD_FILE: MSMg01no123_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:30 2005CHROMAT_FILE: MSMg01no123_c15.g1 PHD_FILE: MSMg01no123_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTGNNCCCCAGTGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGCTCTGACCCTTTAAGTCTCCGGGGNTATTTGANTTT
CTGGAGTCCACCCTTTAAAGTTCCTTATATATATTGGATATTAGTCCCCT
ATCTGATTTAAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTCTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATG
AGGTCCCATTTGTCAATCCTTGATCTTACAGCACAAGCAATTGAAGTTCT
ATTCAGGAATTTTTTTCCCAGTGCCCATATCTTCGAGACTTTTCCCCACT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTCTGTGAAGTTCCTTGAT
CTTTTTTTATTTGACCTTAGTACAACGAGAGAGGAATGGGTCGATTCGCA
TTCTTTTTTTTGCCCCCCCCAGTTGTACCAGCACCATTTGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGCTCTTCAATTCTATTCCATTGGTC
TACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTTTTTCCATTTTTT
TATTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAAAGTCCCC
CATATCCACCCACCCTCACTCCCCTGCCCACCCACTCCCCCTTTTTTGGC
CTGGTGTTCCCCTATACTGGGTCATATTTTGTTTTGCCGTCCTATGTGCC
CTCTCTTTTCTGTGATGGTCTACTATGTCACCTTTTTGATATTTTGCAGT
TATTTGTAAGAGCTTCGGGGTATTGGTTATTTTATAATGGTGTTCCCTTC
TTTACTTTTTGCTAATCTCTTTTATTCCTCTGGTCTTACTTTTCTTTATC
TCCCCCATTTGGTTCCCCTATTTTTCCATTTCATTTTTTGCATTGCCCCT
TTTTTAATTCTTGTTTTTTGTTTGTTCTTTTCTTTATTCTCCTTTGTTAC
TTTTCTCTCTTTGGTTTCTTTTCCTTACNTATCTTTGTTTATTTTATGTT
TACTTTTTTTCTCTCTTTTCTATCTCTCCTTTCTCTTGTAATCAAATCCT
TTCCTATCTTATCTATCTTTCTATTATCTCTCTTCTTTCCTTCGCTTTCT
CTATAATATTAGGTCTTTGCATACTCTCTTTCTTTCTTGAGTATATATTA
TTACTC
NNNCCAACGAAGTGAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTTTTAAGAGCTCAACAATGGGTTTGATGCAGA
AATTCTCTCCGTACTTAGAACCATGAAGTGAATGAAATCAAAAGAAATAA
GAGGAAGCTGGAATCTATATATCTGGGAGGCTACAAACAACCCATAGCAT
GGAAACATTTGATGCAATAATAGAAGGAGATTAAAGAGTCTGAAATGGCT
TAGTGTGCTATTCAGAGGTCTACTTCATATAGGTACAACCTTCGAAGCTT
AGTTTTCTCATCACAAAAAACCCACAAAGCATTCACACACACACACTCAC
ACACACACACACACACACACACACACACACACACACACGCACACTTGTGT
GTGTGTCTTAGTGCCTTTGGAAAAGTTATTTCTGTCCATGTTCCCACTGA
CTTTTTTTCTATACCCTACGATAAAAAAATGTGTAAAGTATACTCACACT
TTATTTACTTATTTTCTTATTTATTTTTAATATTATAATTGTTTCGTTCT
GAAACTCATAAAACTGAGTCCTAGATCTTAGTTTCAGGTCCCACCATAGA
CACAGGCCCTATCTTCATCTGGCATGGTGATGACCAAAACCTGTTTGTCA
ATTGCTAGAGAAAGCCGAGGGGGAACTTGTTTACAAAGAGATCGACGAAG
TCACCCAGCTCCTCGGGGAAGCAAGTCTAGAAAATGGTTGATGGTAAAAC
CGTCTCTATGGCCATAGAAAAGGAAGCAAAGCAAGAACCATGCTGTGCTG
TTTCCTAAACCTACCGTGAGTCCAACTCCTGCATCTAGAGGTGAGACTGC
AACTAAGATCTGACTTCTAAAGCTTTGTACGGAACTACTTGGAACCTTAA
AAGTATGATGCTTATAGGAGGAAGAAGTTGTACCCTAAATGTTAGAGACA
GTTGAACTTTCTGAAGTGTTGTGTGCTAACCTTGTGACAAAGGAAAGTGA
CTCCTGGGGGCCATCCTGCGAAGAAGTTTAGCCTGCGAATTTACCAGGCA
AAACTTTTTTATTCCAAGAAACCTCCCCCCAGAACCTGAAAAATCTCAAC
TCCCCTGAATTGTGTATGGTCGTAAAAAAATATTCCCCCGCAAAATTTAT
TTCTAAAGCCCTCCTTAATCCCTTTTTCCGGGCTTTTGGGGGTCTCCTGC
AATCTGATCAGGCTCAGGGCCACAACATTGTCGGAAAACAAAGCATCTTT
TCGCCATTTTCCTCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_c15.g1 MSMg01no123_c15.g1 CHROMAT_FILE:
MSMg01no123_c15.g1 PHD_FILE: MSMg01no123_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:30 2005
         (596 letters)



>mm_chr16_51116890_51117884
          Length = 995

 Score =  990 bits (512), Expect = 0.0
 Identities = 572/598 (95%), Gaps = 13/598 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaagtgaatgaaatcaaaagaaataagaggaagctggaatctatatatctgggaggct 60
           |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 840 atgacgtgaatgaaatcaaaagaaataagaggaagttggaatctatatatctgggaggct 781

                                                                       
Query: 61  acaaacaacccatagcatggaaacatttgatgcaataatagaaggagattaaagagtctg 120
           ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 780 acaaataacccatagcatggaaacatttgatggaataatagaaggagattaaagagtcgg 721

                                                                       
Query: 121 aaatggcttagtgtgctattcagaggtctacttcatataggtacaaccttcgaagcttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 aaatggcttagtgtgctattcagaggtctacttcatataggtacaaccttcgaagcttag 661

                                                                       
Query: 181 ttttctcatcacaaaaaacccacaaagcattcacacacacacactcacacacacacacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 660 ttttctcatcacaaaaaacccacaaagcattcacacacacacactcacacacacacagac 601

                                                                       
Query: 241 acacacacacacacacacacacac--acgcacacttgtgtgtgtgtcttagtgcctttgg 298
           |||         | ||||||||||   |||||||||||||||||| ||||||||||||||
Sbjct: 600 aca---------a-acacacacacgtgcgcacacttgtgtgtgtgccttagtgcctttgg 551

                                                                       
Query: 299 aaaagttatttctgtccatgttcccactgactttttttctataccctacgataaaaaaat 358
           |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 550 aaaagttatttctgtccatgttcccactgactttttttctataccctaggat-aaaaaat 492

                                                                       
Query: 359 gtgtaaagtatactcacactttatttacttattttcttatttatttttaatattataatt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 491 gtgtaaagtatactcacactttatttacttattttcttatttatttttaatattatagtt 432

                                                                       
Query: 419 gtttcgttctgaaactcataaaactgagtcctagatcttagtttcaggtcccaccataga 478
           |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gtttcgttctgaaattcatgaaactgagtcctagatcttagtttcaggtcccaccataga 372

                                                                       
Query: 479 cacaggccctatcttcatctggcatggtgatgaccaaaacctgtttgtcaattgctagag 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cacaggccctatcttcatctggcatggtgatgaccaaaacctgtttgtcaattgctagag 312

                                                                     
Query: 539 aaagccgagggggaacttgtttacaaagagatcgacgaagtcacccagctcctcgggg 596
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aaagccgagggggaacttatttacaaagagatcgacgaagtcacccagctcctcgggg 254


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 995
Length adjustment: 10
Effective length of query: 586
Effective length of database: 985
Effective search space:   577210
Effective search space used:   577210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)