BAC Information

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BAC

Clone NameMSMg01-124A06
Chromosome16 (Build37)
Map Location 67,808,388 - 67,962,916
singlet/doubletdoublet
Overlap genenone
Upstream geneCadm2, 9330155M09Rik
Downstream geneEG626609
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124A06.T7 (MSMg01no124_a06.b1)MSMg01-124A06.TJ (MSMg01no124_a06.g1)
ACCAG333476AG333477
length1,2291,239
length of high quality
(start - end)		389 (75 - 463)714 (130 - 843)
definitionCHROMAT_FILE: MSMg01no124_a06.b1 PHD_FILE: MSMg01no124_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:31 2005CHROMAT_FILE: MSMg01no124_a06.g1 PHD_FILE: MSMg01no124_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,808,388 - 67,808,771)(67,962,203 - 67,962,916)
sequence
GATTACTCNNNNNGAACATTTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCCATGAACCATGAGAAAATAATCTATCAAAAAACTAA
GAGAGGATGAGAGATAAAGAGAAGGACCATAGATGTGCTAGCCTACTAGT
GAGCTCACTGGTTATGGAAATTCATTTGGTACTTACTGTTTCAAAATAGA
GAGACTAAATGAGGAGTTACAACTTTCTGCATCCATCATCTCACTTTTCA
CTTATTTGGTTTTGAGCAGCAAGCATCTGCAAATAACATTTTAATATCAA
AGTTGAAATATTGTTTCACTTCTCTGATTGTGATGCTTTGAAAAAGGATT
TTTATCTTTTTCATGTATGCACTTTGGAAGAAGACAGCACTATAACCCTG
ACTTCCAATTTGTCTCACATATTATTTTGTCTAACTCACATGAAAAGACC
ATAATATTTCTTGTTTTTTTTCCCCCCGCCACTATGAATTGATCCCCCCC
CAAAAAAAAGAGTGTTGTCTCTCTAATCCATCTATAATGGTATCTTTGCA
GTTAAGAGATTACTTTTAATAGGAAAACAAAATACCTTCAGCCAAATTTC
TCCTGAACCCTGCCCACCCTGTATGTATCTCTTGCCAGACAATGTGAAGT
ACATATGGTTCCATCTCCATTTGTTGCTGGGTCAGCTGCCTAGTAGGCCA
CATACTTACAAAGTGTGAGCTTGACTTTGACTTTGTTTCCTCCCTTTATT
TTCCAGAAAGCTACGTTATAAGAACCTTGCTGCCCAGTTTCATTTTCTGC
TTCCCTCCCCCTCCTTTGAGTTTCTGAATTCCAATCATCTTTACCAAATG
CCTCAACTCCTTTCATTTTTCATCCCAAACCTGACGGCCTCCTGATACAC
AACTTTGCACACCCTGTACCAAATGGCATTTTCCCCCTGTTAATAAGTGC
TCCTTTACCCTTCCCAGTTTTCTAAACTCCCCGTAACTGTCCCTCTTGCT
TCCCCCAATCCATCTATTAACCAGCTTCCCTGCTTCCCTTTTTCCTTTCC
CCTCCAACCAAATGTCCACCTTCATTTCCGCCGCCTTCCCCGCTTTCACC
CCCCCTCCAGCAAAATCTACTCTCATTAGCCTCTCGCGAATTTCCCCTGG
ACCCCTCCCTCCACAAACCGTCTTTCCTCCCCTCTGCATGTTCTCATCTC
TACATTCTTTACCCCTCCTCCACCGATGT

ATTTTANTTNNTAAACGCATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTCTCTTGAAGCTTCTACA
ATCTCCCAGTAGTGTCCTGCCTTTTGGGGCTTAGTTTCTAAAATATGAGC
TTTTGAAAGACATTAAAGATAAAAGTCCTATAACAATTCTCATACAAGAA
GTCCTCACAATATTCTCCATAGCATAAAAATATTATTAAAGAGTATTAGG
CAGAATATTCTCCACGGGACTAGTTAGGGGATAGAATCTCATGAAGAGTC
ACCAAGAAACATAACATGAGTGACAGGAGAAACACAAAAGGGACAGAAAC
CTGAACAAGATTAATAGTTACTGAATGCTAACCATGATTTCTGTATAAGT
GTACAGAATACCAGATTTTCCACTTTGTAGCAGTAATGCTACATTCAACA
TAATATATTAAAAGTAATTAGAGTGAAATACATTTTGATGTAAGAGTTTC
AACCACTTTCCAAGGTACACATATCTACTAAATACTATACTAGTATGGTT
CTATATATAGTGTTATTGCAGATTGTAGACAATAGATTAACGCAAGGTTT
TCTTCTACATTATGAGAGCTTGACCTCTAGTTTGTAAAATACGAGTTAGT
GTTTAAAACTAAGTGCTATTTTTAAAGTTCATTTGGACTTGGTAATATAA
AAAAAATAATAGTTGATAAGTAGCCTTAGTTGCAGTCTACTCTGAGGGCA
ATGGTTCTAAAACAATTCTTTTAAGAACACTGAAAGTTGTGTGTATCTAT
ATATAATAGAAGACATTGAGTCTTATGGGGATGGAGAAATTTACCAAACT
TCAGGTTCTGTATCCATCTCATGCACAGTGTTGTAGCTGATGATTCATCT
TAAGCCTAAATAAAGCCCTCATTTTCTGATACAATGTACCCTGATCATTT
TAAAGTTTAGGATACCAAAAGTTATTTTTTAATTCCATGAGTGGAAAGTA
TTATTTAATTCTAAGCTATTTTTGTTCCCTTGTAAAACTTTGCACAGTTT
TTACAAGGGGCTATGGAAAATACCATATTGAGCTTGTGTGGTTCTTTAAA
GGCAAGGTTTTCGGAATAAGGGTTTAAAACCTTAATAAATAAGGCCCCCG
GAGCCCCCTAAAAATTTTAAAATAAATATTGTTCCCGTTTTGTTTGGCAA
AACTTATAAATTTATATTTTTATAAACCCCATTTAACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_a06.b1 MSMg01no124_a06.b1 CHROMAT_FILE:
MSMg01no124_a06.b1 PHD_FILE: MSMg01no124_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:31 2005
         (389 letters)



>mm_chr16_67808185_67808973
          Length = 789

 Score =  712 bits (368), Expect = 0.0
 Identities = 380/384 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   aaaataatctatcaaaaaactaagagaggatgagagataaagagaaggaccatagatgtg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aaaataatctatcaaaaaactaagagaggatgagagataaagagaaggaccatagatgtg 263

                                                                       
Query: 64  ctagcctactagtgagctcactggttatggaaattcatttggtacttactgtttcaaaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctagcctactagtgagctcactggttatggaaattcatttggtacttactgtttcaaaat 323

                                                                       
Query: 124 agagagactaaatgaggagttacaactttctgcatccatcatctcacttttcacttattt 183
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agagagactagatgaggagttacaactttctgcatccatcatctcacttttcacttattt 383

                                                                       
Query: 184 ggttttgagcagcaagcatctgcaaataacattttaatatcaaagttgaaatattgtttc 243
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 384 ggttttgagcagcaagcatctgcaaataatattttaatatcaaagttgaaatattgtttc 443

                                                                       
Query: 244 acttctctgattgtgatgctttgaaaaaggatttttatctttttcatgtatgcactttgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acttctctgattgtgatgctttgaaaaaggatttttatctttttcatgtatgcactttgg 503

                                                                       
Query: 304 aagaagacagcactataaccctgacttccaatttgtctcacatattattttgtctaactc 363
           |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 504 aagaagacagcaatataaccctgacttccaatttgtctcagatattattttgtctaactc 563

                                   
Query: 364 acatgaaaagaccataatatttct 387
           ||||||||||||||||||||||||
Sbjct: 564 acatgaaaagaccataatatttct 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no124_a06.g1 MSMg01no124_a06.g1 CHROMAT_FILE:
MSMg01no124_a06.g1 PHD_FILE: MSMg01no124_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:31 2005
         (714 letters)



>mm_chr16_67962003_67963116
          Length = 1114

 Score = 1342 bits (694), Expect = 0.0
 Identities = 709/714 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttagtttctaaaatatgagcttttgaaagacattaaagataaaagtcctataacaattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 cttagtttctaaaatatgagcttttgaaagacattaaagataaaagtcctataacaattc 855

                                                                       
Query: 61  tcatacaagaagtcctcacaatattctccatagcataaaaatattattaaagagtattag 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 tcatagaagaagtcctcacaatattctccatagcataaaaatattattaaagagtattag 795

                                                                       
Query: 121 gcagaatattctccacgggactagttaggggatagaatctcatgaagagtcaccaagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 gcagaatattctccacgggactagttaggggatagaatctcatgaagagtcaccaagaaa 735

                                                                       
Query: 181 cataacatgagtgacaggagaaacacaaaagggacagaaacctgaacaagattaatagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 cataacatgagtgacaggagaaacacaaaagggacagaaacctgaacaagattaatagtt 675

                                                                       
Query: 241 actgaatgctaaccatgatttctgtataagtgtacagaataccagattttccactttgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 actgaatgctaaccatgatttctgtataagtgtacagaataccagattttccactttgta 615

                                                                       
Query: 301 gcagtaatgctacattcaacataatatattaaaagtaattagagtgaaatacattttgat 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 614 gcagtaatgctacattcaacataatatattaaaagtaagtagagtgaaatacattttgat 555

                                                                       
Query: 361 gtaagagtttcaaccactttccaaggtacacatatctactaaatactatactagtatggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| 
Sbjct: 554 gtaagagtttcaaccactttccaaggtacacatatctactaaatactgtactagtatggc 495

                                                                       
Query: 421 tctatatatagtgttattgcagattgtagacaatagattaacgcaaggttttcttctaca 480
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 494 tctatatatagtgttattgcagattgtagacaatagattaatgcaaggttttcttctaca 435

                                                                       
Query: 481 ttatgagagcttgacctctagtttgtaaaatacgagttagtgtttaaaactaagtgctat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttatgagagcttgacctctagtttgtaaaatacgagttagtgtttaaaactaagtgctat 375

                                                                       
Query: 541 ttttaaagttcatttggacttggtaatataaaaaaaataatagttgataagtagccttag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttttaaagttcatttggacttggtaatataaaaaaaataatagttgataagtagccttag 315

                                                                       
Query: 601 ttgcagtctactctgagggcaatggttctaaaacaattcttttaagaacactgaaagttg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttgcagtctactctgagggcaatggttctaaaacaattcttttaagaacactgaaagttg 255

                                                                 
Query: 661 tgtgtatctatatataatagaagacattgagtcttatggggatggagaaattta 714
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgtgtatctatatataatagaagacattgagtcttatggggatggagaaattta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1114
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1104
Effective search space:   777216
Effective search space used:   777216
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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