BAC Information

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BAC

Clone NameMSMg01-124I01
Chromosome16 (Build37)
Map Location 64,729,421 - 64,729,850
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha3, LOC100043540, Ckt2
Downstream gene4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931, Pou1f1, Chmp2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124I01.T7 (MSMg01no124_i01.b1)MSMg01-124I01.TJ (MSMg01no124_i01.g1)
ACCAG333839AG333840
length1,1421,142
length of high quality
(start - end)
55 (276 - 330)449 (58 - 506)
definitionCHROMAT_FILE: MSMg01no124_i01.b1 PHD_FILE: MSMg01no124_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:41 2005CHROMAT_FILE: MSMg01no124_i01.g1 PHD_FILE: MSMg01no124_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAACCGTCAGGCCCCCGNNAGNNNGANGGNGANANAGAANNNNCCTTTTA
GGCCCCCCCNANNGNNNNNAGAANANANNGGGGANAGNNAANCNAGGGNG
AAAANANNANNNAAAGGCCCNCAANNCNACCCGGAAAANNAAGAAAGAAA
GGNGGNANNCCAGCCAGAGGGANCAACGAGGCGCACCAAGGGAGGGCCCG
AACNCCGGCNAGANCANANAGACCNAGAAGNNCCNGGGACCGNANCCCAG
CCAAGAGCAGCTTTTTTGCTGGANNAAAACTCCTCTACAAAAGGNATTAG
GTCACCCCCTCCCCCCAAAAAGACAGAGAATTTTTTTTTTTTTGAGNAAA
NANGAACGCAAGGGGGAAGAGGAAAAAAACCCCCCCCCNANANNAGCCGC
CCGCNAAAACGGNCAAANGGAGACCAAAAGAACAGGANAGGAAACGAANA
CGCGCCGGGAAAGAACACNGGAAAAACCAAGGGAGCACACAAAAAACCAC
GAGAGGACCACCAAAAACCACAAGGAGACAACACGAACACGAACAAGAAC
NCAAACAAGCAAACCGCAAAAAAAACCAAAGGAGCCACAGAAAGAACAAG
CAANCCCACGCAGCGGGCACCCAACACCAAAACAGAGCAGGGCCCACAGG
CCAAACAGCGGGCAAGAACACAGCGAACGACACGACAAAAAGCCAACCAA
AGAGGAACGACATTTTTTTTTTTTGTACAAGCAAGGGCCCAGAAAGAGAA
GACACAGGAACTGGCGGACAGGGCACAAGGGAGCCGAAAAGCTTCGTTTC
TCTGTGTTCCCAAACCACCGAGGGAAGGGTACACAAACAATGGCTGTGAA
AAAGCCACTGGGCCCCGAAATTCCTTCCCCGGAATCCCTTCAAAGGTCGA
GGGATATCCCCCGAGGGCAAAAGAGAAACTTGACTCTTAGCGGAAGTAGA
ACTGGCGAATTGCGATAACTGTAAGGAGAAACAACCCGTGGAGGGGGGGG
GGACTCAACTTACCGGGATGGGTTGAAAAGTTTCCTAAAAACTAAATCTC
ATCTCTTAACCGGGTCCGAGATTAAAGGGCACACGCGCACTCCCCTCGAA
AGAAAAGAACTTCCCCCGTCAACGCGGAACCTGCATCAAAAA
CTTAAAGCGCGCCCACNATTAGACACACACACATACCACACACCCTTAGA
CACCCTCACACACACACACAAACACACACACACACAAACACACAAACACA
CACACACATAAACACTGCCGGGAGGAAAGAGAGACAGAAAGAGATACAGA
GAGAAAATAAGTCTTTTTAAAAAGGAAGTTAAAAAGCAAAACTTATCTCT
TGGGCAATAGAGAGGGAAAAATAAAGGTTTCCTTCACTTGATATAATTGC
TGTTGCTAACTGATTATATAATTTGATTTGGGCACTAAGACTACAGAAGA
GTGAGCTAGAGAGATTGCTCAACTGTTAAGAGCACTGATTGTTCTTCCAG
AGGTCCTGAGTTAAATTCCCAGCAACCACATGGTGGCTCACAACCATCTG
TACTGGGGTCTGATGCCCTCTTCTGGTGTGTCTGAAGAGAGCAGTGTTAG
TGTACTCATATGTATAAAATACATAATTAAATCTTTTTTTTAAAAAAAAA
GGACTACAGAAGAGAACTCATAAATGATGACCAGGCTGCCTTCGCAAGAC
CCGGTGTAACTTTTACAATTCAAAAGCAAATGGGGGTGGGGGTTGAATGT
TAAATTGGGGTAGAGTCCCTCCCTATCACACACATAGTAAAATTTACAAA
CCGTAACAAAACAAATGTTTACATAATATTCCCTAACAATAACAAGTTTA
AAATCTCTTTTGGACCGGAGGATAGATGCGCTTCAAAATGTAGGTAGTGG
ATGCCCACCAGTTCAGGTGCTCATAACCCCCCTAAATCCCCCTACTAGAG
GGATTTATACCTCACACTTATTTTACTATTTACCGACGCTAGTTGTTGCT
TCCAACGACTCGGGCTATTTTGTTAACCCTAAACTAAAATTTGCTGGGGG
GNTTTTTCCCTCGCTCCGTTGTTTTAACTTGTTCCTTCGCTGTCGCTCTT
CGTTCCGTTTTGGTATTTCTTCTCACAACTGGCCTCAACCCCCTTTGTAC
TCCTCATAACAATGCTCTGTCTCTTCCAATCGATGTGCCCTTCCCAAAAC
CTGCCCTCCCCCCTTATCTCGGGCCCAATTTTCTTATCTTTCGACCTCTT
GGTGTCGCTCACCCTCTTCCACTCGTCGAACATCTTTCGCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_i01.g1 MSMg01no124_i01.g1 CHROMAT_FILE:
MSMg01no124_i01.g1 PHD_FILE: MSMg01no124_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:41 2005
         (449 letters)



>mm_chr16_64729217_64730065
          Length = 849

 Score =  708 bits (366), Expect = 0.0
 Identities = 416/434 (95%), Gaps = 5/434 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   cacacacacacaaacacacacacacacaaacacacaaacacacacacacataaacactgc 61
           |||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 205 cacacacacacacacacacacacacacacacacacaaacacacacacacacaaacactgc 264

                                                                       
Query: 62  cgggaggaaagagagacagaaagagatacagagagaaaataagtctttttaaaaaggaag 121
            |   ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ag---ggatagagagacagaaagagatacagagagaaaataagtctttttaaaaaggaag 321

                                                                       
Query: 122 ttaaaaagcaaaacttatctctt-gggcaatagagagggaaaaataaaggtttccttcac 180
           ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 322 ttaaaaagcaaaacttatctcttaggg-aatagagagggaaaaataaaggtttccttcac 380

                                                                       
Query: 181 ttgatataattgctgttgctaactgattatataatttgatttgggcactaagactacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgatataattgctgttgctaactgattatataatttgatttgggcactaagactacaga 440

                                                                       
Query: 241 agagtgagctagagagattgctcaactgttaagagcactgattgttcttccagaggtcct 300
           |||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 441 agagtgagctagagagatggctcaaccgttaagagcactgactgttcttccagaggtcct 500

                                                                       
Query: 301 gagttaaattcccagcaaccacatggtggctcacaaccatctgtactggggtctgatgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 gagttaaattcccagcaaccacatggtggctcacaaccatctgtaatggggtctgatgcc 560

                                                                       
Query: 361 ctcttctggtgtgtctgaagagagcagtgttagtgtactcatatgtataaaatacataat 420
           |||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||| 
Sbjct: 561 ctcttctggtgtgtctgaagagagcaatgttggtgtactcatatgtataaaataaataaa 620

                         
Query: 421 taaatctttttttt 434
           ||||||||||||||
Sbjct: 621 taaatctttttttt 634


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)