BAC Information

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BAC

Clone NameMSMg01-125D09
Chromosome16 (Build37)
Map Location 18,115,121 - 18,229,213
singlet/doubletdoublet
Overlap geneRtn4r, EG665975, Zdhhc8
Upstream gene2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh
Downstream geneRanbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125D09.T7 (MSMg01no125_d09.b1)MSMg01-125D09.TJ (MSMg01no125_d09.g1)
ACCAG334361AG334362
length721715
length of high quality
(start - end)
387 (70 - 456)488 (72 - 559)
definitionCHROMAT_FILE: MSMg01no125_d09.b1 PHD_FILE: MSMg01no125_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:11 2005CHROMAT_FILE: MSMg01no125_d09.g1 PHD_FILE: MSMg01no125_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,115,121 - 18,115,504)(18,228,726 - 18,229,213)
sequence
ATCTATAATTGCGGCGCTAATACGACTCCTATTTCGAGAAGAGCGCGGAA
TTCTCACCCTGTTCGGGGTGGCTGACTCTGAGCCCTACCTTAGGAACAGG
TGGGCCCCTGGGCTTCAGGACATGGCCCCAGGGTCTTGATGTCCTTCTTC
CAGGTTCTAGAACCAGACTGCTGACATGTGGAGGATTTGGGGGTGAGCGG
CTCTGTGTAGAGACACCTAAACTTGGCAACAGAGCCAGTTGCTACCCCTC
TCCATGTGTCTCTGAGTCACCGTAGAGAGCCTAGCAGGGCCTTTGAGGCT
CTTCTGCTCCATCTTCCCATCCTGATGCTGCTCACAGCCTTTCATCTCCC
CATGAGCTACCCTTTAACCATCTCAACTCCTGCCCCTAGGAGAAAGTCTA
CAGCAGGATTTTCTGATTGCTGCTGGATCCTCTGCACCCCACCCTCTCCC
TAAGGTAGCAGGGGAAGAGGGGTGTGTCGCCTTCTCCCAGTGTATCACCC
AGCCTCAGTTTCCTCTCGGGTGATGAAAGTGATTCTCTCATCCTTCAGTC
CATCCCCGTGGCTGTCTGGGGACCTAAGCTCTGAGATGTGCCAAGAAACA
CGGTGTCTCTTTTAGGGATGTCTAACTCTCTTGCTCCAAGCCTGTAGTTT
TTCAGTCCCTAGGTAGGCCTTACCCTTTCTTTGAGACCCTCTAAGACTTT
CCTGGAAATTCACCTCGCAAC
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCACTCCTGTCTGGGGCCCTCAGGAGTAC
GGTAGCCTGGGCAAGTTGCCGGTAGGTTGGCTTAGCTGTGTGGCCACCCC
AATCCTGTGCCCTAGGCTAATGGACCTCTCATAATGGAGTCATTTCCTCA
GCTGTGACTTACGTTTTGGACAGTAGCCCTGGGGTTGCCAGGGTTGAAAT
TAGTGCAGGGAGCTTAACACTGAGCAGATGGACACAGCCAAGGCCTAGTG
ATAGCTAAGATCTATCTGCTTGTGTGCCTGCCTGGCAGTGGCCTGGTGGG
CCCAGAAGCATACATATGGCTGCGTCTCAAAATTCTGACCTTGCCTCCTT
CACATCCCTGGTTCTCTGCCCATTGTCCATTGCAGGTGCCCATGGTTGAC
AAGAGCTGTGTCTCCAGCTATTCCTGTCTACAATGGTATCCTCTTCCTCT
TTGTCCTGGCCAACTTCAGTATGGCTACCTTCATGGACCCTGGAGTCTTC
CCCCGAGGTACGTCCCCGTATGGGGCAGCTCATCTGCTTCTTGTCACTAG
ATTGTACGCGGCTGATTGGCGACTCCAGTCCGTGGCCTGGGCAGAGATTA
AAGAGGTCTCCTCCAGCTAGGAATCTCCACCCCCCTGTATCTCTGCCTCC
TTACTGGTCTTGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_d09.b1 MSMg01no125_d09.b1 CHROMAT_FILE:
MSMg01no125_d09.b1 PHD_FILE: MSMg01no125_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:11 2005
         (387 letters)



>mm_chr16_18114921_18115707
          Length = 787

 Score =  688 bits (356), Expect = 0.0
 Identities = 377/384 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggctgactctgagccctaccttaggaacaggtgggcccctgggcttcaggacatggcccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggctgactctgagccctaccttaggaacaggtgggcccctgggcttcaggacatggcccc 260

                                                                       
Query: 61  agggtcttgatgtccttcttccaggttctagaaccagactgctgacatgtggaggatttg 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggtcttgatgtccttcttccaggttctagaaccagactgctgacatgtggaggatttg 320

                                                                       
Query: 121 ggggtgagcggctctgtgtagagacacctaaacttggcaacagagccagttgctacccct 180
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggtgagcggctctgcatagagacacctaaacttggcaacagagccagttgctacccct 380

                                                                       
Query: 181 ctccatgtgtctctgagtcaccgtagagagcctagcagggcctttgaggctcttctgctc 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctccatgtgtctctgagtcactgtagagagcctagcagggcctttgaggctcttctgctc 440

                                                                       
Query: 241 catcttcccatcctgatgctgctcacagcctttcatctccccatgagctaccctttaacc 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catcttcccatcctgatgttgctcacagcctttcatctccccatgagctaccctttaacc 500

                                                                       
Query: 301 atctcaactcctgcccctaggagaaagtctacagcaggattttctgattgctgctggatc 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctcaactcctgcccctaggaaaaagtctacagcaggattttctgattgctgctggatc 560

                                   
Query: 361 ctctgcaccccaccctctccctaa 384
           ||| ||||||||||||||||||||
Sbjct: 561 ctccgcaccccaccctctccctaa 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no125_d09.g1 MSMg01no125_d09.g1 CHROMAT_FILE:
MSMg01no125_d09.g1 PHD_FILE: MSMg01no125_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:11 2005
         (488 letters)



>mm_chr16_18228526_18229413
          Length = 888

 Score =  920 bits (476), Expect = 0.0
 Identities = 485/488 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccactcctgtctggggccctcaggagtacggtagcctgggcaagttgccggtaggttggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ccactcctgtctggggccctcaggagtacggtagcctgggcaagttgccggtaggttggc 629

                                                                       
Query: 61  ttagctgtgtggccaccccaatcctgtgccctaggctaatggacctctcataatggagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttagctgtgtggccaccccaatcctgtgccctaggctaatggacctctcataatggagtc 569

                                                                       
Query: 121 atttcctcagctgtgacttacgttttggacagtagccctggggttgccagggttgaaatt 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 568 atttcctcagctgtgacttacgttctggacagtagccctggggttgccagggttgaaatt 509

                                                                       
Query: 181 agtgcagggagcttaacactgagcagatggacacagccaaggcctagtgatagctaagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 agtgcagggagcttaacactgagcagatggacacagccaaggcctagtgatagctaagat 449

                                                                       
Query: 241 ctatctgcttgtgtgcctgcctggcagtggcctggtgggcccagaagcatacatatggct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ctatctgcttgtgtgcctgcctggcagtggcctggtgggcccagaagcatacatatggct 389

                                                                       
Query: 301 gcgtctcaaaattctgaccttgcctccttcacatccctggttctctgcccattgtccatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gcgtctcaaaattctgaccttgcctccttcacatccctggttctctgcccattgtccatt 329

                                                                       
Query: 361 gcaggtgcccatggttgacaagagctgtgtctccagctattcctgtctacaatggtatcc 420
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 328 gtaggtgcccatggttgacaagagctgtgtctccagctattcctgtctacaatggcatcc 269

                                                                       
Query: 421 tcttcctctttgtcctggccaacttcagtatggctaccttcatggaccctggagtcttcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tcttcctctttgtcctggccaacttcagtatggctaccttcatggaccctggagtcttcc 209

                   
Query: 481 cccgaggt 488
           ||||||||
Sbjct: 208 cccgaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)