BAC Information

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BAC

Clone NameMSMg01-125J03
Chromosome16 (Build37)
Map Location 74,849,232 - 74,849,841
singlet/doubletsinglet
Overlap genenone
Upstream geneRobo2
Downstream geneLOC665042, D930038D03Rik, Rbm11, Stch, LOC546667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125J03.T7 (MSMg01no125_j03.b1)MSMg01-125J03.TJ (MSMg01no125_j03.g1)
ACCAG334621AG334622
length693689
length of high quality
(start - end)
---610 (80 - 689)
definitionCHROMAT_FILE: MSMg01no125_j03.b1 PHD_FILE: MSMg01no125_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:39 2005CHROMAT_FILE: MSMg01no125_j03.g1 PHD_FILE: MSMg01no125_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTGTCCAGCCCAGAGACCCATTTTTTAATGTTAATG
CTTGATTTCCTGATCCTCACCATCCTGACTTCTTTATATATGACTATCAC
TCTTTTAATTAATGACCCTATTCTATAAATATTTTTGATAGATCAATATT
GTATACAATTTTGTCTGATCCCTGATTTGAAATGAAACCCACTTTAGCTC
CACTACCCAAGGCTCACTAGCTTCAAGTATGACGAAATTGTTAAAAGGCT
TACATGTCTGGCATGAAAAGCATTACTATTACACTTGCCATTTAATAGCT
CGTTAACTTTATCTTTTGGGCTTAATTTTTTTTTTACCTTAACGGCATCT
TTATATACCTTTGCATCTCCCGGTTGAGAACTTGCAGATTATACCTGCTT
TTGAATAAATGTTTGCTTAATGAATTAAGATTATGTTTTGACTTTTTTTT
TTTTGACTAGCTGAATTCTGTGCATATCAATCATGACAAGAGTTTTGTCT
AACTCTTGAGGTTGTTCTACTCATTACACAATTTATAACAAGGAACACAC
TGTGTACATGACTGGCTAAGCTAGTCATTTATGTTTTATGGACAAGGAAG
CAGAGACCTACCCCATATAAATACATTAGATGTCTCTCGATAG
CCCTCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTCCAGAGCTTTAAAATGC
ACAAAAGTTAGCTTAGCTTGTATCACCCACAAGCCTCTTTACATAGAGGA
AAGATGTGTGGAGTCCACCACTACATGCACTCATTGAATGCAACTGTGAC
TCTATAAATTGCCAAAGTGTGGCCAAGGTTGTTAGGTTTTACAATAGTTC
TCTAGCTCAGCAAAGCGCTCCAATTTGCTAGTGGACCACATATTACTAGA
GAAATATTGATAAAATCAGAAGTCACTGAGCATATGTTTTACTGAAATGC
AGAAAGCTTCCAGAACCAAATTGAGGCTATGTGTCATTAACAAAATAGGT
TTGCAACTACATCTTTCATGTGTCCTTTTTCATATTAATGGTATAAATTA
TGCTACATTTCATATATTCAATACTGCTGATTGTGTAGTTACTATATACC
AAGAATTATGGTAAAAATGATTTACAGTGTAAGAGTGATATAGACATCAC
AGGATACTGTCAGTTAGCAAAAAGTCTATTGACCACTACAGGAGAATAAA
CAAGAAGAACAATCAGGTGTGATGGAAAACATAGCACTGGGATAGAGGAC
TCTCCTGATCTTCCTAAGGTGTTCGGATACTTCTTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_j03.g1 MSMg01no125_j03.g1 CHROMAT_FILE:
MSMg01no125_j03.g1 PHD_FILE: MSMg01no125_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:39 2005
         (610 letters)



>mm_chr16_74849032_74850041
          Length = 1010

 Score = 1025 bits (530), Expect = 0.0
 Identities = 590/610 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctccagagctttaaaatgcacaaaagttagcttagcttgtatcacccacaagcctctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 ttctccagagctttaaaatgcacaaaagttagcttagcttgtatcacccacaagcctctt 751

                                                                       
Query: 61  tacatagaggaaagatgtgtggagtccaccactacatgcactcattgaatgcaactgtga 120
           ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 750 tacatagaggaaagatgtgtggactcgaccactacatgcactcattgaatgcaactgtga 691

                                                                       
Query: 121 ctctataaattgccaaagtgtggccaaggttgttaggttttacaatagttctctagctca 180
           |||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 690 ctctataaatagccaaagtgtggccaagtttgttaggttttacaatagttctccagctca 631

                                                                       
Query: 181 gcaaagcgctccaatttgctagtggaccacatattactagagaaatattgataaaatcag 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 630 gcaaagcgctccaatttgctagtggaccacatattactagggaaatattgataaaatcag 571

                                                                       
Query: 241 aagtcactgagcatatgttttactgaaatgcagaaagcttccagaaccaaattgaggcta 300
           ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 570 aagtcaccgagcatatgttttactgaaatgtagaaagcttccagaaccaaattgaggcta 511

                                                                       
Query: 301 tgtgtcattaacaaaataggtttgcaactacatctttcatgtgtcctttttcatattaat 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 510 tgtgtcattaacaaaataggtttgcaactacatctttcacgtgtcctttttcatattaat 451

                                                                       
Query: 361 ggtataaattatgctacatttcatatattcaatactgctgattgtgtagttactatatac 420
           ||| ||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 450 ggtgtaaattatgttacatttcatatattcactaccgctgattgtgtagttactatatac 391

                                                                       
Query: 421 caagaattatggtaaaaatgatttacagtgtaagagtgatatagacatcacaggatactg 480
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 390 caagaattatggtaaaaatgatttacagtgtaagagttatatagacatcacaggatactg 331

                                                                       
Query: 481 tcagttagcaaaaagtctattgaccactacaggagaataaacaagaagaacaatcaggtg 540
           |||| |||||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct: 330 tcagatagcaaaaagtctactgaccactacaggagaataagcaagaagaacaatcgggtg 271

                                                                       
Query: 541 tgatggaaaacatagcactgggatagaggactctcctgatcttcctaaggtgttcggata 600
           | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 270 tcatggaaaacatagcactgggatagaggactctcctgatcttcttaaggtgttcggata 211

                     
Query: 601 cttcttttat 610
           ||||||||||
Sbjct: 210 cttcttttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)