BAC Information

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BAC

Clone NameMSMg01-125M13
Chromosome16 (Build37)
Map Location 92,811,214 - 92,811,527
singlet/doubletsinglet
Overlap genenone
Upstream geneItsn1, Atp5o, Mrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1
Downstream geneEG666023, LOC100040747, Setd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125M13.T7 (MSMg01no125_m13.b1)MSMg01-125M13.TJ (MSMg01no125_m13.g1)
ACCAG334782AG334783
length705756
length of high quality
(start - end)
318 (33 - 350)34 (180 - 213)
definitionCHROMAT_FILE: MSMg01no125_m13.b1 PHD_FILE: MSMg01no125_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:56 2005CHROMAT_FILE: MSMg01no125_m13.g1 PHD_FILE: MSMg01no125_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATGCTGC
AAGTGTACTTGTCTCACACCTAGTAGGTGCTCAAGGAGTGTCGCCCTAAG
CTTAGTTTAAATGGATTTAAGTTAACCCTCAGCCTGGGGCACTCACTTTA
CCAAAGACTGAGACGAATGGGCTGTTTTCTCCTTCTCAGGTGCACGGTTC
CAGGAAACACCACAAAGCCACCTTTTGAAGGTAACAGAGGCGGCTCCCCT
GCCTCAGATCCACGGCAGTCTTTACAATTGCTTGTTACTTACTTCTTGAC
ATTCTCTGGGTATCTCCCGTCTTGTGTGTTTCATCTCCAGCCTTTTGATT
TTTTTGTATGCCCCCGCCCCCACTTCCTTACTTTACAAATGGGANTCCAA
AAGGTTAAAACATGGATACAGAAAAGGCTTTGGGAGGAGATCCTAGCGAT
TGGCCAGCAACCAATGGCTGGGTGCCAAGCCTTCCCCTAGAGGGTGGGAA
CCAAGGGCTGGGTGCAAGGCCTTCCCCCAGAGTGTAGGAACCAATGGCTG
CGTGTAAGGCCCTCCCCATGAGGGTGTGAAACAATGGATAGGTGCCACGG
CCTTTCCCAAGAAGAAAGGACCTTCTGGCTGTCTGCTTTGGCCTCCCCCT
GGCCTCTGGTCGTCCTTTGTCTCTGACTGTTACTCCCCCTCTTGCACAAG
GCCCA
GACCCCCCACTTCAATGAAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCATGAGGAACATG
AAGCTATGAGGTGCCCATGACTCTCACGGTACAAAACAGCCAGCTAGGTG
TAGAAATCTGTGTGTTGCTCATAGGCAGTGTTAACTGTCCCTGGGGGAAT
AATCTCTATCTGGGCATAAAGCCACTTGGTGCTCATGGGTAAATGAAAGC
CTGTACTGACCACGCTAAGCTAGAAGACACAAGTTAAGCACAGACTTCCT
GGCACCAATAGTTCCTTGCTGAGCATAAGAAAATGTTTCTGTAAAACGAA
AGAGGGCGAAAGCAGATTGCACGTTTTTTTTTTTTCCCCCCCCCCGCCCC
GCGGCTCTCAACTTTAGAGAAGAGAACTCTCTTGGCCTTAGAAAAAAATA
AAAAAACCCGGGCTGAGGGTCCCCAGCCCGCTACCGGTAGTAACCTCTTG
CCTCCAACACTCCTCTAATGCTAATCCTGCCACACTTGACCGCCTACATC
CCTCTCCCCCCCACGTCCTCTTGCTCCCCCCACCCAAACCTGCATTTGCC
ATTCGCCCCTTCTCGCTCAGCATGCAACCACCCTTTGCTCCCACTAACAC
CCCCCAATCCCCCACCCCATTTACTCCCCCCCCGTCTACATCCTCTCCCC
CTTCCTGTCAAATACCTACCCCTCCCTTGTTCTCACTCCAACTTCTCCCC
CCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_m13.b1 MSMg01no125_m13.b1 CHROMAT_FILE:
MSMg01no125_m13.b1 PHD_FILE: MSMg01no125_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:56 2005
         (318 letters)



>mm_chr16_92811011_92811728
          Length = 718

 Score =  600 bits (310), Expect = e-176
 Identities = 313/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaatgctgcaagtgtacttgtctcacacctagtaggtgctcaaggagtgtcgcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaatgctgcaagtgtacttgtctcacacctagtaggtgctcaaggagtgtcgcc 263

                                                                       
Query: 64  ctaagcttagtttaaatggatttaagttaaccctcagcctggggcactcactttaccaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctaagcttagtttaaatggatttaagttaaccctcagcctggggcactcactttaccaaa 323

                                                                       
Query: 124 gactgagacgaatgggctgttttctccttctcaggtgcacggttccaggaaacaccacaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gactgagacgaatgggctgttttctccttctcaggtgcacggttccaggaaacaccacaa 383

                                                                       
Query: 184 agccaccttttgaaggtaacagaggcggctcccctgcctcagatccacggcagtctttac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agccaccttttgaaggtaacagaggcggctcccctgcctcagatccacggcagtctttac 443

                                                                       
Query: 244 aattgcttgttacttacttcttgacattctctgggtatctcccgtcttgtgtgtttcatc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aattgcttgttacttacttcttgacattctctgggtatctcccgtcttgtgtgtttcatc 503

                         
Query: 304 tccagccttttgat 317
           ||||| ||||||||
Sbjct: 504 tccagacttttgat 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)