BAC Information

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BAC

Clone NameMSMg01-125N03
Chromosome16 (Build37)
Map Location 59,515,088 - 59,515,624
singlet/doubletsinglet
Overlap geneBC043118
Upstream geneSt3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina
Downstream geneLOC672884, Arl6, Epha6, LOC100043804
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125N03.T7 (MSMg01no125_n03.b1)MSMg01-125N03.TJ (MSMg01no125_n03.g1)
ACCAG334807AG334808
length703701
length of high quality
(start - end)
614 (51 - 664)537 (76 - 612)
definitionCHROMAT_FILE: MSMg01no125_n03.b1 PHD_FILE: MSMg01no125_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:59 2005CHROMAT_FILE: MSMg01no125_n03.g1 PHD_FILE: MSMg01no125_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCATGTATCGCCCCATCCCTGCATCCCTGGGATGAAACCTA
CTTGGTCAGGAAAGATGATTGTTTTGATGTGTTCTTGGTTCGGTTAGCAA
GAACTTTATTGAGGATTTTTGCATCGATATTCATAAGGGAAATTGTTCTG
AAGTTCTCTATCTTTATTGGATCTTTCTGTGGTTTAGGTATCAGAGTAAT
TGTGGCTCATAGAATGAGTTGGGTAGAGTACCTTCTGTTTCTATTTTGTG
GAATAGTTAGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTTTTAGA
ACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTATGGTTGGGAGACTA
TTAATGACTGCTTCTATTTCTTTAGGGGATATAGGACTGTTTAGATCATT
AACTTGATCTTGATTTAACTTTGGTACCTGGTATCTGTCTAGAAACTTCT
CCATTTAATCCAGGTTCTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAAG
GATCTGATAGTGTTTTGGATATCTTCAGGATCTCTTGTATTGTCTCACTT
TTCATTTCTGATTTTGTTAATTAGGATGCTTTCGTTGTGCCCTCTAGTGA
GTCTGGCTAAGGGTTTATTCATCTTGTTGATTTTCTCANAGAACCAGGTC
CTC
NAACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTGACCTGTAGTCTCCTCTGCTTA
GCCCATGGCCATAAAACTCAGGGTTTCATTATTTAAAAATTAGGACAGTG
ATCCAGTACTTCCAAATATAGTCAGGCAGGGCCTGTATCCGGTTCGTTCT
TGTTTTCCAGTCTACTCCATAACAGGGGCTATACTTTGAGGTTGAGGTGG
GCTTGTATGTAATCTTCTTAAAATGTTCTGTGTAGCTTTGAAAGTTGAAG
GATGTGGGGAAAACCATTTACCACTGTCATCCGTTGAAGAAGCGCTTTAA
AACTGAGCATGCTGTTTTAAGAATATTGGGCACAGACATGAGAGCAGGAC
ACCTGAGCAGTTATTGGCTGTGAGCTGAGCTGAGTGTGAGCTTCAGACAG
CCACGCTGAGACAAGTAAATGCTGGCCCAGTGTCTTGTTGGGCAACCTGT
TGACTACATTACCACGGGAGCAGAAGTCTACCCCGTGCTTTGACAGTGTC
TCCATGGAGGCTTGGCATAGAAGTCTGGCTTTCTGAAATAATTCTTATCC
TGGCAGCTACAAGCGGGCAAAGCCACAGAGACATATTGCAAGAGCCTGTA
TGAGAAGTTGGAGTGAAATTAGGATTCTGATGACATATAAAGTCTTCAGG
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_n03.g1 MSMg01no125_n03.g1 CHROMAT_FILE:
MSMg01no125_n03.g1 PHD_FILE: MSMg01no125_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:59 2005
         (537 letters)



>mm_chr16_59514888_59515824
          Length = 937

 Score = 1007 bits (521), Expect = 0.0
 Identities = 533/537 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgacctgtagtctcctctgcttagcccatggccataaaactcagggtttcattattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 737 tgtgacctgtagtctcctctgcttagcccatggccataaaactcagggtttcattatttt 678

                                                                       
Query: 61  aaaattaggacagtgatccagtacttccaaatatagtcaggcagggcctgtatccggttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aaaattaggacagtgatccagtacttccaaatatagtcaggcagggcctgtatccggttc 618

                                                                       
Query: 121 gttcttgttttccagtctactccataacaggggctatactttgaggttgaggtgggcttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gttcttgttttccagtctactccataacaggggctatactttgaggttgaggtgggcttg 558

                                                                       
Query: 181 tatgtaatcttcttaaaatgttctgtgtagctttgaaagttgaaggatgtggggaaaacc 240
           | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tgtctaatcttcttaaaatgttctgtgtagctttgaaagttgaaggatgtggggaaaacc 498

                                                                       
Query: 241 atttaccactgtcatccgttgaagaagcgctttaaaactgagcatgctgttttaagaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atttaccactgtcatccgttgaagaagcgctttaaaactgagcatgctgttttaagaata 438

                                                                       
Query: 301 ttgggcacagacatgagagcaggacacctgagcagttattggctgtgagctgagctgagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttgggcacagacatgagagcaggacacctgagcagttattggctgtgagctgagctgagt 378

                                                                       
Query: 361 gtgagcttcagacagccacgctgagacaagtaaatgctggcccagtgtcttgttgggcaa 420
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtgagcttcagacagccacactgagacaagtaaatgctggcccagtgtcttgttgggcaa 318

                                                                       
Query: 421 cctgttgactacattaccacgggagcagaagtctaccccgtgctttgacagtgtctccat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cctgttgactacattaccacgggagcagaagtctaccccgtgctttgacagtgtctccat 258

                                                                    
Query: 481 ggaggcttggcatagaagtctggctttctgaaataattcttatcctggcagctacaa 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ggaggcttggcatagaagtctggctttctgaaataattcttatcctggcagctacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)