BAC Information

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BAC

Clone NameMSMg01-127C15
Chromosome16 (Build37)
Map Location 57,981,488 - 57,981,721
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c, 2610528E23Rik, 4631422O05Rik, Col8a1, LOC435480, LOC629342
Downstream geneLOC100043477, Dcbld2, St3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127C15.T7 (MSMg01no127_c15.b1)MSMg01-127C15.TJ (MSMg01no127_c15.g1)
ACCAG335785AG335786
length697692
length of high quality
(start - end)
361 (47 - 407)233 (120 - 352)
definitionCHROMAT_FILE: MSMg01no127_c15.b1 PHD_FILE: MSMg01no127_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:49 2005CHROMAT_FILE: MSMg01no127_c15.g1 PHD_FILE: MSMg01no127_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCACTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGGAGTCCAACTTCTTGAGTTCTTTATATATATTGGATATTAGTCGC
CTATCCAATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT
TTTTGTCTTATTGATGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTA
TGAGGTCCCATTTATTGATTCTCGATCTTATAGCACAAGCCATTGCTGTT
CTATTCAGGAATTTGTCCCCTGTACCCATATCTTCAAGGCTTTTCCCTTT
CTCTTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCC
ACTTAGATTCACCCCTAGTACAAGGAGATAGAAATGGATCAATTCGAATT
CTTCTACATGATAACCACCAGTTGTGCCAGCACCATTTGCTGAAAACGCT
GTCTTCTTTCCACTGGATGGGCTTAGCTCCTTTGCCAAAGATCAAGTGAT
TATATGCGTGTGCCTTCATCTCTGGGTCTTCTATTCCGCTCCTTTGGCCT
ATCCGTCCGTTTCCTATCCACCCACCATGCTCTCCTTTATCCCCCCTGTC
TTGTCTTCTCGATTTCCTCCCCCTTTGCTCCTCTGACTCCTTTCCAG
CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTCCCCGCGGAATTCACATCTTCTTCTAACAATCAGGACTCAC
AAACAGTACTGTTTCACTCGCTCCTGCAGCTCCTAACCTCCCTAACGCCT
AAGAACCACCTGCATCTCGCCTGCCTTGGGGATGTGACTGCGGTTGCCGC
AGCACTGAAAGAGAACTAAAATGTTGGCATTAAGGCTGATTTTTTTTCAT
TCGAATTCCTTTTCCCCATGCTTCAATGTGTATTTAGTTAATGATGTTGA
TGCCATTTTGGACCATTAGAACAATTTTGGAGCCAAATATACAGCCTATT
TCTTGTCTTGTTTACAATCCAGCCTATGCTGCCAAGGCAAGGAAGGAAGC
TGTGTAACCCCGCGGAGTACAGACAGCTCTTCTGGAAACGCCTAAGTGTA
AAAGGCTGCCAGTCCATCTAGAATTACCTGATTTATCACAAATTGTTCAT
TCTTACATAAAAACAATTTCCTTTCTGACAGACTTTGGGCTTCAGGAAAC
ACACTGAATTTGTTTTCACTGCCCAACATCCATGCGTAATGCGTTGACCA
AAGCAACAATTGGAGACTATATTGACACAGACTGATACAATCTTTACCCC
CCCATATAATGTGAATTCCCTCTTACTTGATGGAAATACCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_c15.g1 MSMg01no127_c15.g1 CHROMAT_FILE:
MSMg01no127_c15.g1 PHD_FILE: MSMg01no127_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:49 2005
         (233 letters)



>mm_chr16_57981288_57981921
          Length = 634

 Score =  414 bits (214), Expect = e-120
 Identities = 229/234 (97%), Gaps = 1/234 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctcctgcagctcctaacctccctaacgcctaagaaccacctgcatctcgcctgccttgg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 434 gctcctgcagctcctaacctccctaacgcctaagaaccacctgcatcttgcctgccttgg 375

                                                                       
Query: 61  ggatgtgactgcggttgccgcagcactgaaagagaactaaaatgttggcattaaggctga 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 374 ggatgtgactgcggttgccgcagcactgaaatagaactaaaatgttggcattaagactga 315

                                                                       
Query: 121 tttttttt-cattcgaattccttttccccatgcttcaatgtgtatttagttaatgatgtt 179
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tttttttttcattcgaattccttttccccatgcttcaatgtgtatttagttaatgatgtt 255

                                                                 
Query: 180 gatgccattttggaccattagaacaattttggagccaaatatacagcctatttc 233
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 254 gatgccattttggaccaatagaacaattttggagccaaatatacagcctatttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 634
Length adjustment: 9
Effective length of query: 224
Effective length of database: 625
Effective search space:   140000
Effective search space used:   140000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)