BAC Information

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BAC

Clone NameMSMg01-127L19
Chromosome16 (Build37)
Map Location 38,360,815 - 38,493,350
singlet/doubletdoublet
Overlap genePopdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3
Upstream geneStxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715
Downstream gene4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127L19.T7 (MSMg01no127_l19.b1)MSMg01-127L19.TJ (MSMg01no127_l19.g1)
ACCAG336194AG336195
length720719
length of high quality
(start - end)
268 (126 - 393)236 (126 - 361)
definitionCHROMAT_FILE: MSMg01no127_l19.b1 PHD_FILE: MSMg01no127_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:35 2005CHROMAT_FILE: MSMg01no127_l19.g1 PHD_FILE: MSMg01no127_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,360,815 - 38,361,082)(38,493,115 - 38,493,350)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAATCCGCGGAAT
TCCAGGACAGCTTTGCCTGACTAGTGAGTTCCAGGTGAGCCTGGGCTGAA
GTGACACCCGGGCAATCAGTCACTCAGAAAGACACCCAAAGCCTGCTGAG
AGAGTCCCGTGGTGCGTTGTTCTCCAAATGCCCCAGCCCTTTCTGTACCA
ATCTCCAGAGACCGGGAGCTATGAAGCCATCTGCAGATCAATCGATTGCA
ATTAACATTTTAAAATGTCTTCCTTTAGCATGGCAAGAACTTTCTGACTT
CTGTAACTATGCTTCTCCTCTCGTCATGAGAGAGTCTGCTCTCCCTTCCA
TCTCACCCCTCAGCTCTGTCCATGTCACCCTTCTTCCTGGGTCATACCGT
TCTTTGAACTTAATTTCACCCCCTGTTGTAGGCATCGAGTTGTCATTGTT
GTTTGTAGCCTCTCCCCTATAAAGCGACACTCATGTGCATGTGTACACTT
GACTGCTGAGATGGAAGCTTCATCTTCTGATTTCTCCTCAGTGTTACTCA
CGTCAGTGATCCTCCATGGACTTAGGATCTGGCTAGTTCTAGGCTGCTGA
GCCTTATCCTATAGCCTTGCATCATCAGCGCTAACATGCTCTCGACCTCC
AAGAGTAGGGACGGAGACCCTCGTCGTTCTTCCGAAGTCAGTCAGCTTCG
TCTCTTGTCTTTCATGCTTG
ACATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTTCTAATAACTGTGTAGATCAGGCTAGCCTTGAACTTCC
AGAGATCCTCCTGAGTGTTGCCCTCACAGGTCTCGAACTGTTTACCACCA
TATTCAGTTCAGCCTCAGATTTCAAAGCTCCATTGTTCTCTTTCATAGAA
GACAAAGCTGATACACACTGACCACAGTTGTCACAGAAGTTAACACAGCA
TTCACTCCATTAACTGACAGAGCATTTAGGACTGCAGCAGTAACTGACCT
ACTTTATGTGTCGTCATAGGACTAATCCCAAATCTTAATGTTTTCCACTC
TTTGGCATCGAGTTATTTCATCCCCCCCCCACTGGAAGCCACATCCTGAG
GAATGATGGAGAGCGACCCCTACTTTAAATCCAGAGAGTCTAAAGCTTTG
AAGCTTCTCCTGCAGGCCCTGGGTTCTCTTCTGAGATTTTGGATGGGAAA
CAAACACGACAGGATAGTTTTAAATGAAGCTTGCCCCATTGATTTATCAT
CATCATGAGTCATTAAGAGAGAATTCATTTACCCCGTGTTTGTACTCCAG
AGCTGCGTTCCTCATTATTGAGCGTATGCCGGCAAAGTGTTTTTTCAGAA
GAGGATCTTGTTCTATGCCCGCCTCTTCCCTAACCCCCATGATTGCCTTA
CCGTCCGATTTTATGCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_l19.b1 MSMg01no127_l19.b1 CHROMAT_FILE:
MSMg01no127_l19.b1 PHD_FILE: MSMg01no127_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:35 2005
         (268 letters)



>mm_chr16_38360615_38361282
          Length = 668

 Score =  480 bits (248), Expect = e-140
 Identities = 263/268 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaagacacccaaagcctgctgagagagtcccgtggtgcgttgttctccaaatgcccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaagacacccaaagcctgctgagagagtcccgtggtgcgttgttctccaaatgcccca 260

                                                                       
Query: 61  gccctttctgtaccaatctccagagaccgggagctatgaagccatctgcagatcaatcga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccctttctgtaccaatctccagagaccgggagctatgaagccatctgcagatcaatcga 320

                                                                       
Query: 121 ttgcaattaacattttaaaatgtcttcctttagcatggcaagaactttctgacttctgta 180
           |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcaattaaaattttaaaatgtctttctttagcatggcaagaactttctgacttctgta 380

                                                                       
Query: 181 actatgcttctcctctcgtcatgagagagtctgctctcccttccatctcacccctcagct 240
           |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 actatgcttctcctctcgccatgagagagtctgctctcccttccacctcacccctcagct 440

                                       
Query: 241 ctgtccatgtcacccttcttcctgggtc 268
           ||| ||||||||||||||||||||||||
Sbjct: 441 ctgcccatgtcacccttcttcctgggtc 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no127_l19.g1 MSMg01no127_l19.g1 CHROMAT_FILE:
MSMg01no127_l19.g1 PHD_FILE: MSMg01no127_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:35 2005
         (236 letters)



>mm_chr16_38492915_38493550
          Length = 636

 Score =  441 bits (228), Expect = e-128
 Identities = 234/236 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaggtctcgaactgtttaccaccatattcagttcagcctcagatttcaaagctccattg 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 acaggtctcgagctgtttaccaccatattcagttcagcctcagatttcaaagctccattg 377

                                                                       
Query: 61  ttctctttcatagaagacaaagctgatacacactgaccacagttgtcacagaagttaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttctctttcatagaagacaaagctgatacacactgaccacagttgtcacagaagttaaca 317

                                                                       
Query: 121 cagcattcactccattaactgacagagcatttaggactgcagcagtaactgacctacttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 cagcattcactccattaactgacagagcatttaggactgcagcagtaactgacctacttt 257

                                                                   
Query: 181 atgtgtcgtcataggactaatcccaaatcttaatgttttccactctttggcatcga 236
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 256 atgtgtcgtcataggactaaacccaaatcttaatgttttccactctttggcatcga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)