BAC Information

Click to search

BAC

Clone NameMSMg01-128B07
Chromosome16 (Build37)
Map Location 59,777,355 - 59,777,612
singlet/doubletsinglet
Overlap geneEpha6
Upstream geneOlfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118, LOC672884, Arl6
Downstream geneLOC100043804, EG668168, LOC668170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128B07.T7 (MSMg01no128_b07.b1)MSMg01-128B07.TJ (MSMg01no128_b07.g1)
ACCAG336446AG336447
length722719
length of high quality
(start - end)
365 (44 - 408)209 (122 - 330)
definitionCHROMAT_FILE: MSMg01no128_b07.b1 PHD_FILE: MSMg01no128_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:03 2005CHROMAT_FILE: MSMg01no128_b07.g1 PHD_FILE: MSMg01no128_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:03 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCAAGTGTTTCCCTAAATAATATGAGGGTAAATATCAACAAAATAT
ATTATACATATGCATGATAAAGTCCTAATGAAGTTCACTATTACTAATTT
TAAAATGTGTTTAAAATAATAATTTTGTTTTTTGTGGCATTCTCAGGTTA
TATTGGAAGCTACATTTCCACATGACCTTGTATAACTATTTCCCTTTATT
TATACAGGTGTTTAGATTATCAACAGATTTTTTCAAAAAACAAAATTTCT
GATACATTGACATAGCAAAACTTCATGTAATAATAACCAAGACTCACTAA
CTATAAACAATTATTAAAACAATCCAAGAGTTGTTTATGTATTTTATATG
TGAATCTGGCTAACCCCCCGGGGTTGGATCACTACACTTGTACAGAGAAA
GGAATGAGGCTTTTTTTTTTTCCTCAGATGGGCCAGGAACTCTTCCTCCT
GTTTAAAATTTCTGTCTGACAGTAATTATGATCTGACAGAACTTTACTTC
CTAAGAAAGAAGAATTACCTCTTAAAGTGTAGTATAGTCCTTTCCAGAAA
ATAAAATTTATGTTTTCAATTCAACCGTTTTGAGATTCCAAATAGAACAC
AGTCACGCCCCAACTTTTGTATTTAATATGCCGACTTACTCCTAAAATGG
TACTGCCTACCATTATGAATTG
GAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGATCTTTCAAGATTTTTACCATGAATG
GGTGTTGATGTTTTGTCACACGCTTTCTCAGTATCTAATGAAATGATCAT
GTGGGTTTTTTTCTTTGAGTTTGTTTATATATTGGATTACATTGATGGTT
TTCTGTGTATTGAACCATCCCTGCATCCCTGGGATGAAGCCTACTTGATC
ATGATAGATGATTGTTTTGATGTGTTCTTGGATTCAGTTTGCAAGAATTT
TATTGGGTATTTTTGCTTCAATATTCATAAGGGAAATTGGTCTGAAATTC
TCTTTCTTTATTGACTCTTTCTCCGCTTTAGCATAAGTATACTTGTGGCT
TTGTATACCACACCGGATAGAGATTCATCTGTTTCTACTTTATAAATACT
TTATAGAGAATTGGTCTTCTATGAAGGTCTGATAGAATTCTTGCACTAAC
CCCATCTGGTCCTGAGATTTTTTTCGGTGGGAGATTTTTAATGACTGCTG
CTATTTCTTTACGGGTTATGGCACTGCCTATATGACATCCTGTTATCTTT
GTATCCTGCTATTTGTCTTATATTATGTCCATTTTTTCTAAGTTTCCCAT
CTTTTGTAGAAAATAAGCCTTTCGCGGTTAGGAACTGATGACTCCCCTTA
TGATCCTGTTGTTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_b07.b1 MSMg01no128_b07.b1 CHROMAT_FILE:
MSMg01no128_b07.b1 PHD_FILE: MSMg01no128_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:03 2005
         (365 letters)



>mm_chr16_59777048_59777812
          Length = 765

 Score =  484 bits (250), Expect = e-141
 Identities = 256/258 (99%)
 Strand = Plus / Minus

                                                                       
Query: 108 taaaatgtgtttaaaataataattttgttttttgtggcattctcaggttatattggaagc 167
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taaaatgtgtttaaaataataattttgttttttgtggcattctcaggttatattggaagc 506

                                                                       
Query: 168 tacatttccacatgaccttgtataactatttccctttatttatacaggtgtttagattat 227
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tacatttccacatgatcttgtataactatttccctttatttatacaggtgtttagattat 446

                                                                       
Query: 228 caacagattttttcaaaaaacaaaatttctgatacattgacatagcaaaacttcatgtaa 287
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 445 caacagattttttcaaaaaacaaaatttctgatacattgacatagtaaaacttcatgtaa 386

                                                                       
Query: 288 taataaccaagactcactaactataaacaattattaaaacaatccaagagttgtttatgt 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taataaccaagactcactaactataaacaattattaaaacaatccaagagttgtttatgt 326

                             
Query: 348 attttatatgtgaatctg 365
           ||||||||||||||||||
Sbjct: 325 attttatatgtgaatctg 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)