BAC Information

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BAC

Clone NameMSMg01-128B13
Chromosome16 (Build37)
Map Location 5,174,508 - 5,174,851
singlet/doubletsinglet
Overlap geneSec14l5
Upstream geneCrebbp, EG436332, Adcy9, EG620313, Srl, Tcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl
Downstream geneNagpa, AU021092, Alg1, 5730409G15Rik, LOC100042436, A2bp1, LOC100042445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128B13.T7 (MSMg01no128_b13.b1)MSMg01-128B13.TJ (MSMg01no128_b13.g1)
ACCAG336458AG336459
length700694
length of high quality
(start - end)
238 (128 - 365)336 (74 - 409)
definitionCHROMAT_FILE: MSMg01no128_b13.b1 PHD_FILE: MSMg01no128_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:04 2005CHROMAT_FILE: MSMg01no128_b13.g1 PHD_FILE: MSMg01no128_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCAATTACTAAATAAATATGGCTAATACCACAGTTAGTGT
TAATCATTCTTAGCAATTATGGACACGCACATTAAAGCTGAGAATTCCTC
AGACCCCAGTCAGAATGGCTAAGATTAACAAAATAACTAGCAAAGAATGT
TAGCGACGATGTTGAGGGAAAGGAATCCTTGTTCCCTGAGAGGTGGTGCA
GCCGCCATGGAGATCAGTAAGAACAACCCTCAGCAATCTAAAAATAAATC
TACCATATGACACTCCTCAGCATATGGCCGAGGAACTCAACACTACTCCA
CCACATTTGCTCAGCCACAGCCATTGTTGTTCTATTCACAACAGCGGGGA
AATGGACCCTAAACGCCCTTCAGCTGAAGGATGCATGATGAAAATGTGGT
GCAGATGCACCATGCAATAGTGTCAAGAAAAATGGTATCATGACCTTTAT
AGATGGAGCTAGAAAATATTAAATTACATGAAATAACCCAGACTCAGGAA
GACAAACACCACATATTCTCTCATCTGTGATTCTGAGCACACATGTTAAA
ATAACCACAGAAAGCATGAAAGTAAAAAGGGACCACTGGACTGAGGTCTC
CTAGAGAAGGGTACACTTTAATATAGGTGCTACAAAGTGGTACATGCAAA

TCAATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGCCTTGAGC
TCAGAAATCCTCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGC
ACCACCATGCTACTCAGTGTGGTGCCTAGTAGCTCAGGCCTGACATCCCA
ACTCCTTGAGAGGTTGGGGCAGGAGGATGCAAGTTTAATGCCTATGCTGG
CCAGGGAGTGAGTTCAGGTATGGCCTGGGAGACACAGACTGAAAAGAAAG
TTGGAGAATGGCTCTGTGGTAGGTCACCTGCCCTGTGAAGCCCTGGATTC
TAAGCCTTAGTGCCTTGAGAGGGGCACAAACTGAAGAGAATAGCTGGATC
TGCAGGGCTCACCTACTGGTCCCTGTGTGCAGGGTCTTCCATAGAGGACA
TGTGTGCCCAGTAAGTTTCATCCACTGATTTACAGTCCTCTGGCTTTGAG
ATCAAGATTGGTGAGTCCACAGTCTCTACTATATACTGTCCTTAGGTAGG
AATGCAGCAAGCAAGGCCATCTGCTGATAAGGACACCAAAATGTGACTGG
ACATGATACAGGACCTACTTCTGTCCCCAGAAGCCGTGCCTGACTATCCA
CTAGCTCAGGGTTCCAGCTTACAGAAGGACGCCCCTCCATATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_b13.g1 MSMg01no128_b13.g1 CHROMAT_FILE:
MSMg01no128_b13.g1 PHD_FILE: MSMg01no128_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:04 2005
         (336 letters)



>mm_chr16_5174316_5175051
          Length = 736

 Score =  623 bits (322), Expect = 0.0
 Identities = 335/344 (97%), Gaps = 8/344 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttgtagaccaggctggccttgagctcagaaatcctcctgcctctgcctcccaagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 actttgtagaccaggctggccttgagctcagaaatcctcctgcctctgcctcccaagtgc 252

                                                                       
Query: 61  tgggattaaaggcatgcaccaccatgctactcagtgtggtgcctagtagctcaggcctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tgggattaaaggcatgcaccaccatgctactcagtgtggtgcctagtagctcaggcctga 312

                                                                       
Query: 121 catcccaactccttgagaggttggggcaggaggatgcaagtttaatgcctatgctggcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 catcccaactccttgagaggttggggcaggaggatgcaagtttaatgcctatgctggcca 372

                                                                       
Query: 181 gggagtgagttcaggtatggcctggga--------gacacagactgaaaagaaagttgga 232
           |||||||||||||||||||||||||||        |||||||||||||||||||||||||
Sbjct: 373 gggagtgagttcaggtatggcctgggaacttttgagacacagactgaaaagaaagttgga 432

                                                                       
Query: 233 gaatggctctgtggtaggtcacctgccctgtgaagccctggattctaagccttagtgcct 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gaatggctctgtggtaggtcacctgccctgtgaagccctggattctaagccttagtgcct 492

                                                       
Query: 293 tgagaggggcacaaactgaagagaatagctggatctgcagggct 336
           |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 493 tgagaggggcacaaacagaagagaatagctggatctgcagggct 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)