Query= MSMg01no128_c15.b1 MSMg01no128_c15.b1 CHROMAT_FILE:
MSMg01no128_c15.b1 PHD_FILE: MSMg01no128_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:10 2005
(546 letters)
>mm_chr16_27600784_27601729
Length = 946
Score = 961 bits (497), Expect = 0.0
Identities = 531/547 (97%), Gaps = 9/547 (1%)
Strand = Plus / Minus
Query: 5 ggaattcttccccctccc-----atgtgatatgcataattttgtttaatcttgttaaaaa 59
||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 765 ggaattcttcc----cccaaaaaatgtgatatgcataattttgtttaatcttgttaaaaa 710
Query: 60 ttttgagaacaagattataaatttgaggagatataatcttagaaaatattaaggtgggaa 119
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 709 ttttgagaacaagattataaatttgaggagatataaacttagaaaatattaaggtgggaa 650
Query: 120 aggcaaatagcttggcaacaataaaatcccctgatactcttgggacttctagattatctt 179
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aggcaaatggcttggcaacaataaaatcccctgatactcttgggacttctagattatctt 590
Query: 180 tccaattaactattgtgaagatgttatttctgagagaaactaatccattatggagttcac 239
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 589 tccaattaactattgtgaagatgttatttctgagagaaactaagccattatggagttcac 530
Query: 240 tgaggagtcttctacagggaagaaagagggggcatcaaatgatgaggactggagcggggg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tgaggagtcttctacagggaagaaagagggggcatcaaatgatgaggactggagcggggg 470
Query: 300 agggaactgaaaggccagatggatggcgagtgtgagattatgacacagaccactgggcaa 359
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agggaattgaaaggccagatggatggcgagtgtgagattatgacacagaccactgggcaa 410
Query: 360 ttgggtattctcctctgggctacttcaattttgaagaaggaaataaagtaaattgcattt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ttgggtattctcctctgggctacttcaattttgaagaaggaaataaagtaaattgcattt 350
Query: 420 cattattatttatttatttgctcaaactaggttatgggaagacaaatgaaaattgctgta 479
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 349 cattattatttatttatttgctcaaactaggttaagggaagacaaatgaaaagtgctgta 290
Query: 480 gaacataaaaccaagcgccataaaaagcttttaaaggagtggaggttgtaatgtctttcc 539
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gaacataaaaccaagtgccataaaaagcttttaaaggagtggaggttgtaatgtctttcc 230
Query: 540 tttgaaa 546
|||||||
Sbjct: 229 tttgaaa 223
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_c15.g1 MSMg01no128_c15.g1 CHROMAT_FILE:
MSMg01no128_c15.g1 PHD_FILE: MSMg01no128_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:10 2005
(412 letters)
>mm_chr16_27467541_27468353
Length = 813
Score = 656 bits (339), Expect = 0.0
Identities = 375/387 (96%), Gaps = 1/387 (0%)
Strand = Plus / Plus
Query: 1 ccttcccatctctggctgatttaaaagagctattttcaggctttcctgccaag-acaaaa 59
|||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 201 ccttcccatctccagctgatttaaaagagctattttcaggctttcctgagaagcacaaaa 260
Query: 60 gagaagagtgaaagggttggaccagaacggctatccagagaattctcttgcctagcaagt 119
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaagagtgaaagagttggaccagaacggctatccagagaattctcttgcctagcaagt 320
Query: 120 aagtagtcggggaaagaatgcagtatgatgtctggaagaaacacagaagagtcggccaaa 179
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtagtgggggaaagaatgcagtatgatgtctggaagaaacacagaagagtcggccaaa 380
Query: 180 gggaggagcagggtttaaatgatggaaataaaaacgtttgaggagctattctaaatgttt 239
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 381 gggaggagcagggtttaaatgatggaactaaagacgtttgaggagctattctaaatgttt 440
Query: 240 tggtgttcagcattcctattgaaagagacaagactatctgtgtgctaaagtctggctgcc 299
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 441 tggtgttcagcattcctattgaaagagacaagactatctgcgtgctaaagtccagctgcc 500
Query: 300 tctttataagaactacttgaagtatacagtacagagaaagtgaaagtcatatttgaaaat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctttataagaactacttgaagtatacagtacagagaaagtgaaagtcatatttgaaaat 560
Query: 360 ttttatataaactagccaaaatgtggt 386
|||||||||||||||||||||||||||
Sbjct: 561 ttttatataaactagccaaaatgtggt 587
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 813
Length adjustment: 9
Effective length of query: 403
Effective length of database: 804
Effective search space: 324012
Effective search space used: 324012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
