BAC Information

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BAC

Clone NameMSMg01-128D13
Chromosome16 (Build37)16 (Build37)
Map Location 36,582,800 - 36,583,11236,156,976 - 36,157,197
singlet/doubletsingletsinglet
Overlap geneEG667232
Upstream geneSema5b, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr
Downstream geneCd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l, Gtf2e1, Rabl3, Hgd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128D13.T7 (MSMg01no128_d13.b1)MSMg01-128D13.TJ (MSMg01no128_d13.g1)
ACCAG336552AG336553
length698691
length of high quality
(start - end)
315 (75 - 389)222 (123 - 344)
definitionCHROMAT_FILE: MSMg01no128_d13.b1 PHD_FILE: MSMg01no128_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:14 2005CHROMAT_FILE: MSMg01no128_d13.g1 PHD_FILE: MSMg01no128_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:14 2005
singlet/doubletsingletsinglet
BLAST hituniqueplural
Map location.(36,582,800 - 36,583,112)(36,156,976 - 36,157,197)
sequence
CCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTGATTTCCTAAATTATAATGAAAATCCCTTCTTCTGAAGT
GGAGAGGATCCACATCCAGACCAACATTATGGATAGCAATACATGGCTGA
TGCAAGGGATAGGAACCCCAGCTGTAGCTCCAGGGGCTGAGTTGTTTCTG
GGTCTTCTTTTCTCCATGGAGATAATACTCAAATTTCACCAGCATATTCT
CTCCTGTGTTATTATATTCTTTTTTTTTCCCCAAGCCTTACTTCATTTTT
ACTGTGCACTGATTATATTACACCTGAAGGCTTCAGGAAAATGAAAGGTC
ACTCTTCTGAATAAAGTGACTAACCTCCTGGGTGTTGGTGGTCCAAAAAT
AAACAGATCCTAGCCAACACAAGATTGATACATATAATTTAGGTATGCCC
AAAATAGATTAGCAATTGCAGCAAGTCCTGGTCTACTAATGAATAATTGT
CTCATTCTGTTAATAACAAAGCATAGAAAATCTTGGAAACTTGAACATAG
AAAATTTCCTCTCCCCCATACACTTCTTTCTTAAAGACTCAGTTGAGAAC
ACCTACAGATGTTTGTAGTTTGAAGCCATTACAAGCACGGCATTGGAATG
AAGGTGGCCCCCATATTTTCCACTTCCTGATTGAGCTTCTGGTTCACT
CAATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTGTTCCCAAGAAATTCACTTTCAGGCTCTGGGGAAGGTAAGGC
TGCAGTAAAGAGTTTTGCCCCCCCGACTTTCTCTTGGGATGTTAAAAGCA
CTCTGGCTTAATATTCCACATTTAGCTGTACCAAAGTTTGAACAAAACCC
ATATATTTCTGGTTTCTGTGATATCCCACACTCTTACTGCAATGTCAAAA
TGTGAATCAAATTCTGAAGGTTTGATTTGGGATCAACCTTTTTCCTGAAA
TACATGGACTCACCATGTTAGCAATCTTCTGGATTTCTGATGTGGCAGGT
CTGGCCTTTGACAAGCCTCCCTTTATTTTTCTGGCGTATTCAGTCATTGC
TGTTCAGGCTGCTGAGAAGAAACGATCCAGCTAGCACAGAGACTCTTGGT
TTTAAAGGTATCTGTAAACTCCTCCTCCATAATGTATCTCCAGTGTATCT
AAGGCACTGGTGAAATGAGTGTGACTTCAGACAATTTCTTACTGCTTCCC
TGATGTCAAACGCTTTATATAGCTGTAGGTAATTGAGTCGCCCAATGTGA
CTTGTGGTTGCGCCCGGTACCACGCGTGTTGAGAATGGTTCCTCTCTGAA
CTTTTAAGTCAAAAACGCTACTATGTTGTGCCATCATTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_d13.b1 MSMg01no128_d13.b1 CHROMAT_FILE:
MSMg01no128_d13.b1 PHD_FILE: MSMg01no128_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:14 2005
         (315 letters)



>mm_chr16_36582598_36583312
          Length = 715

 Score =  567 bits (293), Expect = e-166
 Identities = 308/313 (98%)
 Strand = Plus / Minus

                                                                       
Query: 3   aatgaaaatcccttcttctgaagtggagaggatccacatccagaccaacattatggatag 62
           |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 515 aatgaaaatcccttcttctggagtggagaggatccacatccagaccaagattatggatag 456

                                                                       
Query: 63  caatacatggctgatgcaagggataggaaccccagctgtagctccaggggctgagttgtt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 caatacatggctgatgcaagggataggaaccccagctgtagctccaggggctgagttgtt 396

                                                                       
Query: 123 tctgggtcttcttttctccatggagataatactcaaatttcaccagcatattctctcctg 182
           |||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 395 tctgggtcttcttttccccatggagatactactcaaatttcaccagcatattttctcctg 336

                                                                       
Query: 183 tgttattatattctttttttttccccaagccttacttcatttttactgtgcactgattat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgttattatattctttttttttccccaagccttacttcatttttactgtgcactgattat 276

                                                                       
Query: 243 attacacctgaaggcttcaggaaaatgaaaggtcactcttctgaataaagtgactaacct 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 attacacctgaaggcttcaggaaaatgaaaggtcactcttctgaataaagtgactaacct 216

                        
Query: 303 cctgggtgttggt 315
           |||||||||||||
Sbjct: 215 cctgggtgttggt 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no128_d13.g1 MSMg01no128_d13.g1 CHROMAT_FILE:
MSMg01no128_d13.g1 PHD_FILE: MSMg01no128_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:14 2005
         (222 letters)



>mm_chr16_36156776_36157397
          Length = 622

 Score =  344 bits (178), Expect = 2e-99
 Identities = 211/222 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccgactttctcttgggatgttaaaagcactctggcttaatattccacatttagctgtacc 60
           |||||||| |||||  |||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 422 ccgactttatcttgaaatgttaaaggcactctggcttaatgttccacatttagctgtacc 363

                                                                       
Query: 61  aaagtttgaacaaaacccatatatttctggtttctgtgatatcccacactcttactgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aaagtttgaacaaaacccatatatttctggtttctgtgatatcccacactcttactgcaa 303

                                                                       
Query: 121 tgtcaaaatgtgaatcaaattctgaaggtttgatttgggatcaacctttttcctgaaata 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 302 tgtcaaaatgtgaatcaaattatgaaggtttgatttgggatcaacctttttgctgaaata 243

                                                     
Query: 181 catggactcaccatgttagcaatcttctggatttctgatgtg 222
           |||||||||||| ||| |||||||| ||| ||||||||||||
Sbjct: 242 catggactcaccttgtcagcaatctcctgaatttctgatgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 622
Length adjustment: 9
Effective length of query: 213
Effective length of database: 613
Effective search space:   130569
Effective search space used:   130569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)