BAC Information

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BAC

Clone NameMSMg01-128E22
Chromosome16 (Build37)
Map Location 36,391,683 - 36,392,022
singlet/doubletsinglet
Overlap genenone
Upstream genePdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105
Downstream geneStfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128E22.T7 (MSMg01no128_e22.b1)MSMg01-128E22.TJ (MSMg01no128_e22.g1)
ACCAG336616AG336617
length713702
length of high quality
(start - end)
343 (74 - 416)606 (76 - 681)
definitionCHROMAT_FILE: MSMg01no128_e22.b1 PHD_FILE: MSMg01no128_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:21 2005CHROMAT_FILE: MSMg01no128_e22.g1 PHD_FILE: MSMg01no128_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:21 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGACTTTTTCTCCCTGACTGCAAACTCACAGAGATCCCCCTGCCTCT
GCCTCCTAAGTGCTGGGATTAAACCACTGCACCACCATGTCCATTGATTA
CATATTTGGAAGAAACTTCGTGTAGCCCAGGCTGTCCTGGGGCTCACTAT
GAACCTTGAGCTTCTGGGTCTCCTGCATCTGCCTGCAGAGGGCTAAGGTT
ACAGGCGTGGCCTTGAATGTCTGATGCTTCTGTCTCTGCTTCCCAAGTGA
TGGGTTTACAGTCAGTAGGTACCTTATCAGGCAATATCCCAACCATATAA
AACATAAGGCTTCTCATTAGAAGAATTGCTGGGTGTCAAGAGAGTAAAGC
TAGGAATATCAGGGAACACCCCCACAGCTAAGGGACAGAGGCTTGCTGCT
GACACATACCTGCCCATTGGAATGATGCCACCAGAAAGAAAGGACTGGAG
ACATGTCAGTTCCAAGTGACATATTCATAGATATCTGCTATTCTATTGTG
TTCTTCTGTATTTAAACAATGCTAAACATTAAGATAAAAGTGAAATACAA
ATATTTTAAAACAACCAAAATCATTCTTACCAGGGTACTGAGATTGTTTT
AAAGAAAAACACAGAAAGAAGTCTAATAAATTATCTTTCTTTACAAGTAC
AGATACCAGAACC
CCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTAGGAATTCAGCAAGGAAGTTAC
CTATTCAGTAACTAATTAGCATCACAAAAGACAGAGCCAACAGCTCATGG
CTAGTCTGCAAAATGTTTACTAGGACAGAAAGGACAGTCTTAACCAAATA
AGGGTTTACCATGAGAAAAGTTAGGGAATCCCACTGAGACAGGTTTCTCC
ATTAGACCCTAAGAATTCAGGCAGAACTATAAAGCATAAATAAATTTTAT
GCCGCAGCCCAACCTTTCTTTTTTATATTAACAACAGGGAGGAGATGTAA
CCTCCCTCCCACAGCCTGAACTCAGGCTGAACAGGCTTGACTGCTATCAC
TAGGAGATCACTGCCCCCGGAGCCTGCCACCCTATCGTTCTGCCACTCCC
ACTGCTGCTATCTGCTGCCTAGCTGTTCCAGAGTATACACGTGGTCACCT
GCAGCTGGACTCCGAAGATGATTTGGCAGGAATGGGCCCCTCCCCCTTCT
TTGTAAGCCCATGTTTCCGAATATTAAAATTGAGCTTTGATCATAATCTT
GTCTCAGCTCCATCCTTTCTCTCGCTGCCGAGATTCCCTCTTTTCTTCCA
GATTCCAAGATGCCTTCCAGGCTCGAACCCAGACATGTGAGCCGCTGGCT
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_e22.b1 MSMg01no128_e22.b1 CHROMAT_FILE:
MSMg01no128_e22.b1 PHD_FILE: MSMg01no128_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:21 2005
         (343 letters)



>mm_chr16_36391483_36392225
          Length = 743

 Score =  497 bits (257), Expect = e-145
 Identities = 320/341 (93%), Gaps = 3/341 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   aaactcacagagatccccctgcctctgcctcctaagtgctgggattaaa-ccactgcacc 60
           ||||||||||||||||||||||||||||| |||||||||||||||||||  || ||||||
Sbjct: 201 aaactcacagagatccccctgcctctgccccctaagtgctgggattaaagaca-tgcacc 259

                                                                       
Query: 61  accatgtccattgattaca-tatttggaagaaacttcgtgtagcccaggctgtcctgggg 119
           |||||| ||||| |||||| | ||||||||||||||| ||||||||||||||||||||||
Sbjct: 260 accatgcccattaattacattttttggaagaaacttcatgtagcccaggctgtcctgggg 319

                                                                       
Query: 120 ctcactatgaaccttgagcttctgggtctcctgcatctgcctgcagagggctaaggttac 179
           | |||| ||||||||||  ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 320 cacactgtgaaccttgaatttctgggtctcctgcctctgcctgcagagggctaaggttac 379

                                                                       
Query: 180 aggcgtggccttgaatgtctgatgcttctgtctctgcttcccaagtgatgggtttacagt 239
           |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 380 aggcatggccttgaatgtctgatgcttctgtctctgcttcccaagtgatggatttacatt 439

                                                                       
Query: 240 cagtaggtaccttatcaggcaatatcccaaccatataaaacataaggcttctcattagaa 299
           |||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 440 cagtaggtgccttatcaggcaatatccgaaccatgtaaaacataaggcttctcattagaa 499

                                                    
Query: 300 gaattgctgggtgtcaagagagtaaagctaggaatatcagg 340
           |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 500 gaattgctgggtgtcaagagagtagagctaggaatatcagg 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)