BAC Information

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BAC

Clone NameMSMg01-128N03
Chromosome16 (Build37)
Map Location 82,995,569 - 82,995,858
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665260
Downstream geneEG545172, LOC100039572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128N03.T7 (MSMg01no128_n03.b1)MSMg01-128N03.TJ (MSMg01no128_n03.g1)
ACCAG336992AG336993
length709712
length of high quality
(start - end)
295 (73 - 367)291 (70 - 360)
definitionCHROMAT_FILE: MSMg01no128_n03.b1 PHD_FILE: MSMg01no128_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:02 2005CHROMAT_FILE: MSMg01no128_n03.g1 PHD_FILE: MSMg01no128_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAGGACCGCGGAAT
TCTTTGTTCTGCCTTGAGCTACTATTTAAGGTGGCTATTTGACTTTCTGG
AGTCCACCCTCTTGAGTTCCTTATATATATTGGATATTAGTCCCCTATCT
GATTTAAGATAGGTGAAGATTCTTTCCCAATCTGTTGTTGGCTTTTTTGT
CTTATTGATGGTGTCTTTTGCCTTGCAGAAGCTTTCCAGTTTCATGAGGT
CCCATTTGTCAATCCTTAATCTTACAGCACAAGCCATTGCTGCTCTATTC
AAGAATTTTTTCCCTGTGTCCATATATTCGAGACTTTTCCCCACTTTTTC
CTCTATAAGTTTCAGTGTCTCCGGTTTTATGTGGAGTTTCTTGATCCACT
TAGATTTGACCTCATTACAAGGATAGAGGAATGGCTCAATTCGCATTCTT
CTACATGATAACCACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTC
TTTTTTCCACTGGATGGTTTTAGCTCCCTTCTCGAATATCAATTGACCAT
ACGTGTGTGGGTTCATTTCTGGGTCTTCAGCTCTATTCCATTGCCCTACT
TGGCTGTCACTATCCCGGTACTCATGCAGTTTTATTCCCCCTGCCCTGTA
TTATAGCTTTACGTTCAGGCCCGTGTTTCCCCCACCACTCCCTTTTATCC
TTGATAAAA
GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAAAGTCTCAAAAAGTCAGAAATATCTGTGA
TAATTTTAATTGAGTGTCTCGTGCCGCATCTTCCAGACACCTGTAAAATT
AAAACTATGCACCTTATAATAAATAAAGGTACTTTGTTTCAGTAGATAAG
AAAACAGTGATTAGCATCAATAGAGAGCTAAACGAAATAGAGGTAGATTC
GGGTTTACCTTGTGCATGATCTATACAGTGAGTTAGCATACAGACAGAGT
GACGATAGGAAAATACAGTCTAGAAAACTACACTTTCTTCATGATTCCTG
TTACTTGAATAGATATTACCGCGTCTTGCACCTGAAAAAAATGAAAGAAA
AAAAAAGACCAACAAGGAGAAGGAGAAGGTAACTGTGATGGCTCATCTTC
CTTGTCTCTGTGACTGGATCTGGAACCAACTGAGAGCTGCTCTTGTGTGA
GGTTGAAAAGTATTTTCTGAAAGGGTTAACTTAGCTCTCATCAAGACCCC
TATATATGTAACCCCAGGGCCACAGAGAATGTGTCCGCCTTTACCTGCCA
CGCTCCTTCCCCACTGGTGAGTGAATCCACCATGTTGTTGCTATTGCTAC
CCACATTCCTTTGCAGAATTCAGGAAACTGCCTTTTGTGCCCTTAATTGA
CCCACCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_n03.g1 MSMg01no128_n03.g1 CHROMAT_FILE:
MSMg01no128_n03.g1 PHD_FILE: MSMg01no128_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:02 2005
         (291 letters)



>mm_chr16_82995369_82996058
          Length = 690

 Score =  540 bits (279), Expect = e-158
 Identities = 288/291 (98%), Gaps = 1/291 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagtctcaaaaagtcagaaatatctgtgataattttaattgagtgtctcgtgccgcat 60
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 201 caaagtctcaaaaagtcagaaatatctgtgataattttaattgagtgttt-gtgccgcat 259

                                                                       
Query: 61  cttccagacacctgtaaaattaaaactatgcaccttataataaataaaggtactttgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cttccagacacctgtaaaattaaaactatgcaccttataataaataaaggtactttgttt 319

                                                                       
Query: 121 cagtagataagaaaacagtgattagcatcaatagagagctaaacgaaatagaggtagatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cagtagataagaaaacagtgattagcatcaatagagagctaaacgaaatagaggtagatt 379

                                                                       
Query: 181 cgggtttaccttgtgcatgatctatacagtgagttagcatacagacagagtgacgatagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cgggtttaccttgtgcatgatctatacagtgagttagcatacagacagagtgacgatagg 439

                                                              
Query: 241 aaaatacagtctagaaaactacactttcttcatgattcctgttacttgaat 291
           ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaaatacagtcgagaaaactacactttcttcatgattcctgttacttgaat 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 690
Length adjustment: 9
Effective length of query: 282
Effective length of database: 681
Effective search space:   192042
Effective search space used:   192042
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)