BAC Information

Click to search

BAC

Clone NameMSMg01-129J05
Chromosome16 (Build37)
Map Location 58,074,962 - 58,075,222
singlet/doubletsinglet
Overlap geneLOC100043477
Upstream geneTomm70a, Nit2, Tbc1d23, Tmem30c, 2610528E23Rik, 4631422O05Rik, Col8a1, LOC435480, LOC629342
Downstream geneDcbld2, St3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129J05.T7 (MSMg01no129_j05.b1)MSMg01-129J05.TJ (MSMg01no129_j05.g1)
ACCAG337550AG337551
length724729
length of high quality
(start - end)
262 (66 - 327)---
definitionCHROMAT_FILE: MSMg01no129_j05.b1 PHD_FILE: MSMg01no129_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:02 2005CHROMAT_FILE: MSMg01no129_j05.g1 PHD_FILE: MSMg01no129_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGAGAGCCGCGGAATTCTAT
ACTTTTCCTGCTGAGGAGTTCATACTCTACTAGAGGAACCACAAAACTGT
TTTTATCATATTTTCCTTACTGGCAAATCTCAATGAAAGAAAGAAAAAAC
AGCCTTTGAATTGAATGGACATTTGAACTCATTTTCTAATGATTATCTTT
GTTGTACTGGCTGGTTGTGTGTGTCAACTTGACACAAGCTGGAGTTATCA
CAGAGAAAGGAGCCTCCCTTGAGGAAATGCCTCCATGAGATCCAGTTGTA
AGGTATTTTCTCAATTACTGAACATGCCCGAGGCCCCAGCCTATTGCGGT
TGGTGCCATCCCTGCCCCGCAACTCCTTGTATCTATAATAAAGCAAACTG
ATTAATCCACGGTAATGAATTCAGTAGCAGCCCCTTCATGGTCTCTGTCT
TAGCTGCCTCCCAGTTCCTCTACTGCGTGAGTTCCAGTCCTGACTTCCTT
TGATGATGAACTTCAATGTGCAAATATAAGCTGAATAATCCCTATTCTCC
CCCAATTGTTTTTTGCGCTTGATTTTCTGACCACGATTCCACACTCTCAA
ACTTTGTCACCCACCCACCCGCACGATATTATAATTATGACTTACCTCCC
CTCTTTTTTCCTTTATCCCGATGCTCCACTGCATTATTATCCCCCTTATT
TTTAACCCAATTCTATCCCCCCCA
AAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTGCTGTGTGTGTGTGTGTGTGTGCGTGTGTG
TGTGTACATGGACATCCGCGTATGGGAAGACCAGAGGTTGACTCTGCTTG
TCCTCTAGCCCTCGTACCTGTCTTGCTCTTGGACACAGTGTGCTCCCATC
ATGCTTGCGTTTTAAATGAATGGCGGGGCTCTGAACTCAGATCTGTGTTG
CTTTGTAGAAGAGCTCAAAAAACGTTACTGTTCCGAGTTTAGAATTTATT
TTTATCTTGCCTATTGCTGTAACAAATAAACTGGATCCTATGGGGGAAAA
ATTATCTTTATTTATACCCCCCCCCCCCTACGGAAAATCCCCTTAACAAT
TGCAGCTGCCTCCTCCTATATACAAAACTATAAATACAGGCACCGTGCTT
CTCTCATAAAACTGTCTATATAATCTCTTTCTCAATTGTTATCCCCGCAA
TACACTAAGTATTTAGTTTCACAACCCGTCCTTGCTTGCCCTTTTTTCTC
GCCAGTATCTTAACTGCAAGCTTCCCCCCTTCTGACCCTACTTCCTTTCT
CATACATTCACAGCCCATATGATAAAACTACCTCTAATATTTTTACCAAA
AAAATATCAATATTAATTATTTTTTCTTTTATCCTCTATACTACATCCAC
TCCTACCCTTCTTTTCTCGTTTTCTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_j05.b1 MSMg01no129_j05.b1 CHROMAT_FILE:
MSMg01no129_j05.b1 PHD_FILE: MSMg01no129_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:02 2005
         (262 letters)



>mm_chr16_58074762_58075423
          Length = 662

 Score =  474 bits (245), Expect = e-138
 Identities = 257/261 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagttcatactctactagaggaaccacaaaactgtttttatcatattttccttactggca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 gagttcatactctactagaggaaccacaaaactgtttttatcatatttttattactggca 260

                                                                       
Query: 61  aatctcaatgaaagaaagaaaaaacagcctttgaattgaatggacatttgaactcatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatctcaatgaaagaaagaaaaaacagcctttgaattgaatggacatttgaactcatttt 320

                                                                       
Query: 121 ctaatgattatctttgttgtactggctggttgtgtgtgtcaacttgacacaagctggagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaatgattatctttgttgtactggctggttgtgtgtgtcaacttgacacaagctggagt 380

                                                                       
Query: 181 tatcacagagaaaggagcctcccttgaggaaatgcctccatgagatccagttgtaaggta 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 tatcacagagaaaggagcctcccttgaggaaatgcctccatgagatccagttgtaaggca 440

                                
Query: 241 ttttctcaattactgaacatg 261
           |||||||||||| ||||||||
Sbjct: 441 ttttctcaattagtgaacatg 461


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 662
Length adjustment: 9
Effective length of query: 253
Effective length of database: 653
Effective search space:   165209
Effective search space used:   165209
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)