BAC Information

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BAC

Clone NameMSMg01-130L16
Chromosome16 (Build37)
Map Location 41,910,715 - 41,911,009
singlet/doubletsinglet
Overlap geneLsamp
Upstream geneEG667450
Downstream geneGap43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130L16.T7 (MSMg01no130_l16.b1)MSMg01-130L16.TJ (MSMg01no130_l16.g1)
ACCAG338408AG338409
length735736
length of high quality
(start - end)
295 (62 - 356)306 (55 - 360)
definitionCHROMAT_FILE: MSMg01no130_l16.b1 PHD_FILE: MSMg01no130_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:40 2005CHROMAT_FILE: MSMg01no130_l16.g1 PHD_FILE: MSMg01no130_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTCTGTGCTA
CATTTTCCACTATATCCCACTAGCAATTTTATTTGTTCATGTGAAGTGAT
GTGGCCTTGTGAAACCCCCTATAGTGAATCAACGTGATGCCAAACTGGAC
TGGAGGTTATAGCAAGGTGGATTCCAGTTGATCTGCCTTTAAAAATAATT
CACAAGGTATTTATATCATTAAAACCAAGTGCAAAGATGATTTAGCTTCA
TAATCTGGTTGTTGCTCTCATTTTTTCCTGAGGAAGTTTGCGCAGAACCT
TCCAGCATGCTTTGTATATTATAGATAATTAATGAATAGGTGATTTTTTT
TGTCATTTTTTTCTCCCCCGCACCACCACGGCTACATTATACAAGACATT
AAAATAGAATATAAATCACTGAAATCAGTAATGTTTTATGTTAAGTACAT
GTATTATATAGTTGTCATGTGACACATATATTATGTGTGCAAGTGAGTGT
TTATGTGTAAAAGTCTGAGTTCTGAAATCATCCTGGATTTCTTGTTTCTG
GGACTTGTGCATCTCACTGATTTTGCAGGATTTTTGATGACTCTCCCATG
TATTTATTCTGCCTTATTTTCTCTTTCCCTTTTGGCTTATACCATTCTAT
CATCTCATAGAGGGCTAGGCTATCTCCTTCTATGTTTCGCAACTTTTCAT
TTTTTGCGCCTGTTTATCCGCGCTTATGTATTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTCCGAATTCATCTTAAGAAAGAAATAAAAGGAATTTATTCCCTC
CAGAATATAAATGGCCTTGCTGTGCATAAGGTGATATCTGGGTATGCTGG
ACATTGTTTTTGTTCATAGGGATCACATCTGGGTATGACTACTGACCACT
TTTCTCTCCTGGCTACTTGGATAGTTCCTTCCAGTCCTATGATGGCTAGT
CTTCAGGGTGGACATTACTGTAGCAGTTGCTGCTGATTACTTTAAGTTCT
CCATATGAAGTGTATGGTGTCTTACTTTCAATTTCTTAGAGGCAACAAAG
GGTAGTGGTTTTTAGCCTATCCCGCCCAGGAGTTGGATGAGACTTTTTCT
TGGACTTCACTGGCCAATGACGTGATGGGAGATTTCCCATGTCTGCCACA
GGGATTTTTGTGAGTCTTGATCAATAGAAGGAAATCTATGTATGATACTG
CCTGTTGAAGCCAAGAAAGATAGAGTAGATTCTACTAGTGTCATTTTACT
AAACTAGCATAATTTCTAACCTCATTGTAAATACTTCTCTTTAGGTCTTC
AGATAAGTTTGGTTTTCATCCCTCACCAAAGAAGGTTCTTTATTTTTGTA
GCAGACGGAGACCATTCTCACAGGTCATACTGGTGAAAATGCCTATAACA
GTTAATTGCGGGCTGCCTGGTCTCAGCTGGTACAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_l16.b1 MSMg01no130_l16.b1 CHROMAT_FILE:
MSMg01no130_l16.b1 PHD_FILE: MSMg01no130_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:40 2005
         (295 letters)



>mm_chr16_41910515_41911210
          Length = 696

 Score =  516 bits (267), Expect = e-151
 Identities = 288/299 (96%), Gaps = 9/299 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatcccactagcaattttatttgttcatgtgaagtgatgtggccttgtgaaa----ccc 56
           |||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 495 atatcccactagcaattttatttgttcatgtgaagtgatgtggccttgtgaaatggt--- 439

                                                                       
Query: 57  cctatagtgaatcaacgtgatgccaaactggactggaggttatagcaaggtggattccag 116
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 -ctatagtgaatcaacgtgatgccaaactggactggaggttatagcaaggtggattccag 380

                                                                       
Query: 117 ttgatctgcctttaaaaataattcacaaggtatttatatcattaaaaccaagtgcaaaga 176
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 379 ttgatctgcctttaaaaataattcacaaggtatttatataattaaaaccaagtgcaaaga 320

                                                                       
Query: 177 tgatttagcttcataatctggttgttgctctcattttttcctgaggaagtttgcgcagaa 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgatttagcttcataatctggttgttgctctcattttttcctgaggaagtttgcgcagaa 260

                                                                      
Query: 237 ccttccagcatgctttgtatattatagataattaatgaataggtga-ttttttttgtca 294
           |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 259 ccttccagcatgctttgtatataatagataattaatgaataggtgatttttttttgtca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 696
Length adjustment: 9
Effective length of query: 286
Effective length of database: 687
Effective search space:   196482
Effective search space used:   196482
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)