BAC Information

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BAC

Clone NameMSMg01-130M19
Chromosome16 (Build37)
Map Location 50,956,091 - 50,956,371
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628951, EG224180, EG667802, LOC100043404, Bbx, LOC100043414, Ccdc54, LOC672778, 5330426P16Rik
Downstream geneEG639820, LOC627543
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130M19.T7 (MSMg01no130_m19.b1)MSMg01-130M19.TJ (MSMg01no130_m19.g1)
ACCAG338462AG338463
length711698
length of high quality
(start - end)
648 (51 - 698)282 (71 - 352)
definitionCHROMAT_FILE: MSMg01no130_m19.b1 PHD_FILE: MSMg01no130_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:47 2005CHROMAT_FILE: MSMg01no130_m19.g1 PHD_FILE: MSMg01no130_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAGGCGC
GGAATTCAATATAGTTACCTTGCTATCTTGTCAAAAGCAATCTACAGATT
CAAGGCAATCCCCATCAAAATTCCAACTCAATTCTTCAATGAATTAGAAA
GGGCAATCTGCAAATTCATCTGGAATAACAAAAAACCTAGGGTAGCAAAA
ACTCTTCTCAAGGATAAAAGAACCTCTGGTAGAATCATCATGCCTGACCT
AAAGCTGTACTACAGAGCAATTGTGATAAAAACTGCATGATACTGGTTGA
ATGACTGACAGGTAGATTAATGGAATATAATTTAAGACCCAAAAATGAAC
CCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCAAAAACCATCCA
GTGGAAAAAAGACAGTATTCCCAACAAATGGTGCTGGCACAACTGGTGGT
TTTCATGCAGAAGAATGTGAATTGATCCATTCCTATCTCCTTGTACTAAA
GTTAAATCTAAGTGGATCAAGGAACTCCACATAAAACAAGATACAGTGAC
ACTTATAGAAGAGAAAGTGGGGAAAAGCCTCAAAGATATGGGCACAGGGA
AATATTCCTGAATAGAACAGCAATGGCAAGGATCTTTACCTATCCTAAAT
CAGATAGGGGACTAATATCCAATATATATAAAGAGCTCAAGAAGGTGGAC
TCCAGATAATC
CTCATGATAGGGGAGCCTGGCGGCGCCTGGTTCCGACATTAGGTGACCTA
TAGAAGTTCCCCGAAATTCAATTCTAGTGCTATCTATTTTCAGTTTTGTG
ATTAGATTGTTTGGACCCGTATACAATTTAATTGTCAAAACTTGACCATC
TAATTTGTTATTGTGCAGTTCATCAGGCAATTTGTAAGTATTACCATGAA
AGGAATTCTAGCCTTGCAGAAATTCTCCTGAGGTTGAAGTAATCTCAGGA
ATATAAATGTTATACACTTTCTCCATAGAACAGAAAGCATTGTTGTCTAG
GGACTAAAGCATCATTGTTTAGGGAGAGGAGTCCCTGTACAGCGGCAACA
AATTATTTGTTTTTGCACCCCCCCCGCATGGAAGTGCCCTTCTCTGACCC
AACACTCAGGAGGTAAAAGAAAAAAAAACTCTGCAAGATATAAGTCAGCC
TGTTCTTCCTAGTAAATTCTAAACTAGCAGAGCTGGGTAGTGAGAGCCCG
TCTCGGAACATGAAAGAAAAATATAACAACAGAGATAAATTGAAATAAAA
CTATCACTTAGTAAACAATGCTTTGGATGTTGTGTTATATTGTAACTGAC
ATGTGAACTGTTTTATGAAATATCAAGTTGAAGAACAATAGAAAAGGGAA
TAATAGAGTAAAAGTGACCTGAGGGTGGCTGGGATAATGAGGCGGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_m19.g1 MSMg01no130_m19.g1 CHROMAT_FILE:
MSMg01no130_m19.g1 PHD_FILE: MSMg01no130_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:47 2005
         (282 letters)



>mm_chr16_50955890_50956571
          Length = 682

 Score =  489 bits (253), Expect = e-143
 Identities = 274/281 (97%)
 Strand = Plus / Plus

                                                                       
Query: 2   ttctagtgctatctattttcagttttgtgattagattgtttggacccgtatacaatttaa 61
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 202 ttctagtgctatctattttcagttttgtgattagattgtttggagctgtatacaatttaa 261

                                                                       
Query: 62  ttgtcaaaacttgaccatctaatttgttattgtgcagttcatcaggcaatttgtaagtat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttgtcaaaacttgaccatctaatttgttattgtgcagttcatcaggcaatttgtaagtat 321

                                                                       
Query: 122 taccatgaaaggaattctagccttgcagaaattctcctgaggttgaagtaatctcaggaa 181
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 322 taccatgaaaggaattctagccttgcagaaattctcctgaggttgaagtactctcaggaa 381

                                                                       
Query: 182 tataaatgttatacactttctccatagaacagaaagcattgttgtctagggactaaagca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tataaatgttatacactttctccatagaacagaaagcattgttgtctagggactaaagca 441

                                                    
Query: 242 tcattgtttagggagaggagtccctgtacagcggcaacaaa 282
           ||||||  ||||||||||||| ||||||||| |||||||||
Sbjct: 442 tcattgcatagggagaggagttcctgtacagtggcaacaaa 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)