BAC Information

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BAC

Clone NameMSMg01-130P07
Chromosome16 (Build37)
Map Location 45,704,316 - 45,749,884
singlet/doubletdoublet
Overlap geneTagln3, Abhd10, Phldb2
Upstream geneBC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7
Downstream geneEG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110, Pvrl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130P07.T7 (MSMg01no130_p07.b1)MSMg01-130P07.TJ (MSMg01no130_p07.g1)
ACCAG338581AG338582
length1,220701
length of high quality
(start - end)		416 (41 - 456)628 (74 - 701)
definitionCHROMAT_FILE: MSMg01no130_p07.b1 PHD_FILE: MSMg01no130_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:00 2005CHROMAT_FILE: MSMg01no130_p07.g1 PHD_FILE: MSMg01no130_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,749,484 - 45,749,884)(45,704,316 - 45,704,943)
sequence
NNNAAAATTNNNNNNGAACACTGGGCGCTAAGACTCCTAAGGGAGAGGAT
CCGCGGAATTCACTAGTAGTCAAGTGTGCATTTCAGGGACCCCAACAGCA
AATTAATTCCAAAACCTCCCTCCTTCTAACCCAAGCAAAGGCTGTTGCTA
AACTGAAACTTTCAGTGGCTGATTTTCAATTTCATTTTAAATACAACATT
TTGCCATATTCAGGATCCTGATACCAAAACTGATAAGAAGAAGATTCCTC
CAGCTCTTTTTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTTTTCAAGAC
AGGGTTTCTCTGTATTGTCGTGGCTGTCCTGGAACTCACTCTGTAGACCA
GGCTGGCCTGGAACTCAGAAATCTGCCTGCCTGTGCCTCCCAAATGCTGG
GATTAAAGGTGTGCGCCACCACCACCCGGCCCCTCCAGCTCTTTTGCATC
CACATCTTATATCACCCACCAGCAGAATGGCCTTGGGTGGAAAAAGCTGC
CAGTTTGGCCCTGTTCACAGCTGTCTGTCATCAGACCTGTGTGCTTGAGG
CTAGCCTGTTACACATAGTGAGTTCTAGAACTTCCATGGCTATGTAGAGA
CCCCGTCTCAAAATTAATTAATTAGTTAGTTTTTAGTTAATTAAAAATAA
ATAAAACATTAGACGTGTTCTTTGGCAGTCCCATATATGTATAAGAGGTA
TTCTGACCACTCTCTCACTCACCCTTTCTTATCTCCTCCCAACCCCTGTT
AACCTCTTTGTCCTCTACCAAGCTCTTTCCCACATTCATGTCTATTTGTC
TAATGACCCAATGATTTTAACCAGAGCCCTCTGTGTGACCATAGGTTTGT
CATATCCATTGAAGTCTCGGTTATTGCATTAGCCCTAGGTCATCTGAGGT
CATTTAAATGCTAAGTAAATATTTTAATAAGGACCATAAATCATGAACTT
AGGGTTTTTTTTTTTCCTGTTCATCAGGGGAAAAAAAAGTTCTTAACCCC
TCCCCTGTCTTTGCAGACAAACCTTGAGGTTAAATTGTAAAGGCGTGAAA
ATACTTTTCAGGCCTCTTGAAAAAAATGTTTTTATTATTCCCCCCCCGAA
AACGCTAAAAAGGGGAAGAAACCCAATTCCTCCAAATTTTCCAAAAAATT
TGTTTTATACACCCAAAAGGCCCCTTTTTGGTCCAGAGAACAAATTATTT
TTCTCTCCCCCCCCCTTCTC

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGAGACACTGCATTTTTGCTCAAGAC
TGCAAGAGTTTTGATATTTTGAGACTATATTATATAGGCTCAGAACCAAA
GAGCGCTTTGATTTTACTGAGTTATAAATCAGTTAACCATATTTCACATA
AGCTCTCTCACTTAAAATATTCACTAGGAGCCATAATCTAAACACACGCA
TGCTAACACAAGTAAATTGCGTGTGCAGTTTATCCCGAGGGTAGAATGAG
TCGTCCATCAACCTCAAATGACTAAACCATTTTACAAAACTGTAAGGTAA
TAGGTACAAAGTGGATAGTAGTATCGGGTGTGCCTTCCAAGGAGAATTAA
CTCAGATATTCGTCTGTTGCAGGATATACTCCAGGTCATTTTGAGCTGAC
CTTGTGCCAAAGAAAAGACTAATGTTAAAAATATCCAATTCTCGTTCTTT
TGTTTGTTGCACATGCTAGCACAGCCCTGTACTGATGTGAAAAAATCTTA
TTTGTACAATTAACAGCCTGTTGGCATCACAGAGAAAGCCTGAGCACTAT
AGATTTAAAAATCCCACTCACCGATCTTTTCACTTGTGGTTTTAGTGGCC
ACAGGAGAGGTATTACCAAGGACACTTGAGGTTTGCAGAATGACTTTTTG
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_p07.b1 MSMg01no130_p07.b1 CHROMAT_FILE:
MSMg01no130_p07.b1 PHD_FILE: MSMg01no130_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:00 2005
         (416 letters)



>mm_chr16_45749466_45750281
          Length = 816

 Score =  768 bits (397), Expect = 0.0
 Identities = 400/401 (99%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattcactagtagtcaagtgtgcatttcagggaccccaacagcaaattaattccaaaac 75
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 419 gaattcactagtagtcaagtgtgcagttcagggaccccaacagcaaattaattccaaaac 360

                                                                       
Query: 76  ctccctccttctaacccaagcaaaggctgttgctaaactgaaactttcagtggctgattt 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ctccctccttctaacccaagcaaaggctgttgctaaactgaaactttcagtggctgattt 300

                                                                       
Query: 136 tcaatttcattttaaatacaacattttgccatattcaggatcctgataccaaaactgata 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tcaatttcattttaaatacaacattttgccatattcaggatcctgataccaaaactgata 240

                                                                       
Query: 196 agaagaagattcctccagctctttttttgtttgtttgttttgttttgttttgtttttttc 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 agaagaagattcctccagctctttttttgtttgtttgttttgttttgttttgtttttttc 180

                                                                       
Query: 256 aagacagggtttctctgtattgtcgtggctgtcctggaactcactctgtagaccaggctg 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 aagacagggtttctctgtattgtcgtggctgtcctggaactcactctgtagaccaggctg 120

                                                                       
Query: 316 gcctggaactcagaaatctgcctgcctgtgcctcccaaatgctgggattaaaggtgtgcg 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 gcctggaactcagaaatctgcctgcctgtgcctcccaaatgctgggattaaaggtgtgcg 60

                                                    
Query: 376 ccaccaccacccggcccctccagctcttttgcatccacatc 416
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 59  ccaccaccacccggcccctccagctcttttgcatccacatc 19


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no130_p07.g1 MSMg01no130_p07.g1 CHROMAT_FILE:
MSMg01no130_p07.g1 PHD_FILE: MSMg01no130_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:00 2005
         (628 letters)



>mm_chr16_45704116_45705143
          Length = 1028

 Score = 1214 bits (628), Expect = 0.0
 Identities = 628/628 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagagacactgcatttttgctcaagactgcaagagttttgatattttgagactatattat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagagacactgcatttttgctcaagactgcaagagttttgatattttgagactatattat 260

                                                                       
Query: 61  ataggctcagaaccaaagagcgctttgattttactgagttataaatcagttaaccatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataggctcagaaccaaagagcgctttgattttactgagttataaatcagttaaccatatt 320

                                                                       
Query: 121 tcacataagctctctcacttaaaatattcactaggagccataatctaaacacacgcatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcacataagctctctcacttaaaatattcactaggagccataatctaaacacacgcatgc 380

                                                                       
Query: 181 taacacaagtaaattgcgtgtgcagtttatcccgagggtagaatgagtcgtccatcaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taacacaagtaaattgcgtgtgcagtttatcccgagggtagaatgagtcgtccatcaacc 440

                                                                       
Query: 241 tcaaatgactaaaccattttacaaaactgtaaggtaataggtacaaagtggatagtagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaaatgactaaaccattttacaaaactgtaaggtaataggtacaaagtggatagtagta 500

                                                                       
Query: 301 tcgggtgtgccttccaaggagaattaactcagatattcgtctgttgcaggatatactcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcgggtgtgccttccaaggagaattaactcagatattcgtctgttgcaggatatactcca 560

                                                                       
Query: 361 ggtcattttgagctgaccttgtgccaaagaaaagactaatgttaaaaatatccaattctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtcattttgagctgaccttgtgccaaagaaaagactaatgttaaaaatatccaattctc 620

                                                                       
Query: 421 gttcttttgtttgttgcacatgctagcacagccctgtactgatgtgaaaaaatcttattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttcttttgtttgttgcacatgctagcacagccctgtactgatgtgaaaaaatcttattt 680

                                                                       
Query: 481 gtacaattaacagcctgttggcatcacagagaaagcctgagcactatagatttaaaaatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtacaattaacagcctgttggcatcacagagaaagcctgagcactatagatttaaaaatc 740

                                                                       
Query: 541 ccactcaccgatcttttcacttgtggttttagtggccacaggagaggtattaccaaggac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccactcaccgatcttttcacttgtggttttagtggccacaggagaggtattaccaaggac 800

                                       
Query: 601 acttgaggtttgcagaatgactttttga 628
           ||||||||||||||||||||||||||||
Sbjct: 801 acttgaggtttgcagaatgactttttga 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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