Query= MSMg01no131_m23.b1 MSMg01no131_m23.b1 CHROMAT_FILE:
MSMg01no131_m23.b1 PHD_FILE: MSMg01no131_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:09 2005
(588 letters)
>mm_chr16_68485815_68486802
Length = 988
Score = 797 bits (412), Expect = 0.0
Identities = 576/704 (81%), Gaps = 116/704 (16%)
Strand = Plus / Plus
Query: 1 ttcaaatgagattgataaagccaaataccttaaaaatattttctttctttctttctttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 ttcaaatgagattgataaagccaaataccttaaaaatattttctttctttctttctttct 144
Query: 61 ttctttctttctttctttctttctttctttctttctttctttctttctttctttctttct 120
||||||||||||||| ||||||| ||||||| ||||||| ||||||| ||||||| ||||
Sbjct: 145 ttctttctttctttcgttctttcgttctttcgttctttcgttctttcgttctttcgttct 204
Query: 121 ttcg--------------------ttctctctctctctctctcttccttccttccttctt 160
|||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 ttcgttctttctttctctctctctttctctctctctctctctcttccttccttccttctt 264
Query: 161 ccctccctccctcccttctctctctttctctctttctttccctccctcccactctctctc 220
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 265 ccctccctccctcccttctctctctttctctctttccctccctccctcccactctccctc 324
Query: 221 cctccc--------------------------------------------------tc-- 228
|||||| ||
Sbjct: 325 cctcccttctttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt 384
Query: 229 ct--ttcttcttcttcttctctctctctctctctctctctctct---------------- 270
|| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttcttcttcttcttcttctctctctctctctctctctctctctctctctctctctctct 444
Query: 271 -------------------------t-ttttaccaatatttcttaatggaatttgtctgg 304
| |||||||||||||||||||||||||||||||||
Sbjct: 445 ctctctctctctctctctctctctctcttttaccaatatttcttaatggaatttgtctgg 504
Query: 305 gataatttgacaactagatataatgtgggaaatttaacaagtgacagagaacttagagac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gataatttgacaactagatataatgtgggaaatttaacaagtgacagagaacttagagac 564
Query: 365 tacttaaaattaatagaagatactagattattaaatagttgctatagtaatatggcagag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 565 tacttaaaattaatagaagatactagattattaaatagttgctatagtaatatgggagag 624
Query: 425 acagaaatacagagaaatgaaaaggcattgaattattttataaaggaaattagaagcatg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acagaaatacagagaaatgaaaaggcattgaattattttataaaggaaattagaagcatg 684
Query: 485 gaatgataattttgtcacatattcctatattttttgaagataaattgttttctacaatat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaatgataattttgtcacatattcctatattttttgaagataaattgttttctacaatat 744
Query: 545 actctgatcactattttcctgtttaccaactaaacccagatcct 588
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 745 actctgatcactattttcctgtttaccaactattcccagatcct 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 168
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no131_m23.g1 MSMg01no131_m23.g1 CHROMAT_FILE:
MSMg01no131_m23.g1 PHD_FILE: MSMg01no131_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:09 2005
(286 letters)
>mm_chr16_68598970_68599655
Length = 686
Score = 485 bits (251), Expect = e-141
Identities = 275/283 (97%), Gaps = 2/283 (0%)
Strand = Plus / Minus
Query: 1 taaaatggtaactaatgtaggaattttctcctcttaccaatttcc-ttcactctaatatg 59
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 482 taaaatggtaactaatgtaggaattttctcctcttaccaatttcctttc-ctctaatatg 424
Query: 60 ttgatgaagttgcctaatgcaattgttttagaagaataacacttgaaagcagaggaagct 119
|||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 423 ttgatgaacttgcctaatgcaattgttttagaaaaataacacttgaaagcagagaaagct 364
Query: 120 ctgggtgagtaaggttctgatatagtgtatattgtttacaagagcaaagaggtgacaaga 179
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 363 ctgggtgagtaaggttctgatatagtgtatattgtttacaagaacaaagaggtgacaaga 304
Query: 180 aacaatgcatctgactgaagggttagtctttaaaaggagaaagctttcttcctcatccaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aacaatgcatctgactgaagggttagtctttaaaaggagaaagctttcttcctcatccaa 244
Query: 240 gttgaagtgtttacagaagattaatcagaacatagaaatgcca 282
||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 243 gttgaagtgtttagagatgattaatcagaacatagaaatgcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
