BAC Information

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BAC

Clone NameMSMg01-131N09
Chromosome16 (Build37)
Map Location 15,999,747 - 15,999,987
singlet/doubletsinglet
Overlap gene2310008H04Rik
Upstream geneLOC100042737, LOC665653, LOC385748, LOC100042743, LOC547302, EG632352, Ube2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd
Downstream geneLOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131N09.T7 (MSMg01no131_n09.b1)MSMg01-131N09.TJ (MSMg01no131_n09.g1)
ACCAG339235AG339236
length741729
length of high quality
(start - end)
124 (130 - 253)236 (75 - 310)
definitionCHROMAT_FILE: MSMg01no131_n09.b1 PHD_FILE: MSMg01no131_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:11 2005CHROMAT_FILE: MSMg01no131_n09.g1 PHD_FILE: MSMg01no131_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCG
CGGAATTCTGCCTGTTCCTATAATGCTGTAGGGTTTTTTTTTTGTTTTGT
TTTGTTTTGTTTTGTTTTGTTTTTCCCTAGGAGATTTTAATTACTGCTTC
AATTTCATGAGGGACTATGGATCTATTTAAATTGCTCATCTGATCTTGAT
TAACTTTCGTAGGTTGTATAGATTAAGAAATTCATCCTTTTTTTGTTTGT
TTAGGATTTTCAACTTTATGACATACAGATTTTTAAATGATGTCCTTATT
AATCTCTGGGTTTCTTCAGCAATTATTATGTCACTCCTTTAACCTCTAAT
TGTATTAATTTGTATTTTCTCTTACCATGCTTTAGTTAGTTTGCCTAAGA
ATCAGTCAGTTTTTCTGATTTCTTGAAGAACAAACACTTTCACTGCTTCA
TCTTATTGTTTTTCATGGTGATAACTTTTTCTTTTTTCTATTTCATTGAT
TTGAATCCTGAGTTCAATTATTCCTTGTTTTCTATTCCTTTTTGAATCTT
CTTTCCTCTGGTGTTCTAGAGATTTTAGGTGTGGGCTAACTGAAACCTCT
CCAATAATTTGATTGTAAGTCACTTAATGATATGAATATGCCTCCTAAAA
CTGTCTTCATTGTGCACCATAAGTTAGGGATGCTGCATTTTCATTATCCT
TCCGAATCCATAAAGGGTTTAATATTCCTTTCTATTTTTGA
ATCGATGCAGTGCGAGGCTGGCGACGCCTGTTCTACAAATGTAGGTGAAC
TATAGAAGTTCCTCAAAATTCCCCTGATACATCTAGTGAAGATATCAATG
CCATATGAGAATACAACCCATGTACCTTTGTACCATACAGTTATCAGAAC
TACTTCCGTTATTATCTACTCTATAAAGCTAGAAAAGCATGCATTGAGAT
ACTTTAAGCTCTGAAAGTAAATAACTGTGAATCGAAAGAGTGTTTTTTCC
TAGCAAGTTCCCTTTCAAAATTGATGAAAAAACAAAAATATTTCTGACAA
ACAAAATGTAATGCTTTTTATGACAGCCAAATCAGCACTAAATAATATTT
TTAAAATTATTACTACCCACCAACGAATTTAAAAAACCCTTCCTGTACTG
GCTAGTTTTGTGTCAACTTGACGCAGCTGGAGTTATCACAGAGAAAGGAG
CTTCTGTTGAGGAAATGCCCTCCATGAGATACAACTGTAAGGCATTTTCT
CACCTAGTGATCAGGGAGAAAGGCCCCTTGTGGGTGGGAATATCTCTGGG
CTGGTAGTCTTGGTTCTATAAAATAGTAGGTTGAGTAAGCCTGGGTAAGC
AAGCCCAGTAAGGAACATCCCTCCATGGCCTCAGCAACAGTTCCTGCTTC
CTGACCTGCTTGAATTCCAGTCCTGAACTTCCTTTGATGTATAATATCCC
CATGGAAATGTAACCCGAAATATCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_n09.g1 MSMg01no131_n09.g1 CHROMAT_FILE:
MSMg01no131_n09.g1 PHD_FILE: MSMg01no131_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:11 2005
         (236 letters)



>mm_chr16_15999547_16000187
          Length = 641

 Score =  404 bits (209), Expect = e-117
 Identities = 232/241 (96%), Gaps = 5/241 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatacatc-tagtgaagatatcaatgccatatgagaa-tacaacccatgtacctttgta 58
           ||||||||| ||||||||||||||||||||||||||||  ||||| ||||||||||||||
Sbjct: 201 tgatacatcatagtgaagatatcaatgccatatgagaagaacaactcatgtacctttgta 260

                                                                       
Query: 59  ccatacagttatcagaactacttccgttattatctactctataaagctagaaaagcatgc 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatacagttatcagaactacttccgttattatctactctataaagctagaaaagcatgc 320

                                                                       
Query: 119 attgagatactttaagctctgaaagtaaataactgtgaatcgaaa---gagtgttttttc 175
           |||||||||||||||||||||||||||||||||||||||| ||||   ||||||||||||
Sbjct: 321 attgagatactttaagctctgaaagtaaataactgtgaattgaaacaagagtgttttttc 380

                                                                       
Query: 176 ctagcaagttccctttcaaaattgatgaaaaaacaaaaatatttctgacaaacaaaatgt 235
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtagcaagttccctttcaaaattgatgaaaaaacaaaaatatttctgacaaacaaaatgt 440

            
Query: 236 a 236
           |
Sbjct: 441 a 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 641
Length adjustment: 9
Effective length of query: 227
Effective length of database: 632
Effective search space:   143464
Effective search space used:   143464
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)