BAC Information

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BAC

Clone NameMSMg01-131P14
Chromosome16 (Build37)
Map Location 24,021,419 - 24,021,601
singlet/doubletsinglet
Overlap genenone
Upstream geneKng2, LOC666486, LOC666489, Kng1, LOC666493, Eif4a2, Rfc4, Adipoq, LOC100043541, EG625835, BC106179, St6gal1, Rtp1, Masp1, LOC100043018, Rtp4, EG625969, LOC100043023, Sst, Rtp2, Bcl6
Downstream geneEG433009, LOC666580, LOC100043564, 1110054M08Rik, Lpp, A730098P11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131P14.T7 (MSMg01no131_p14.b1)MSMg01-131P14.TJ (MSMg01no131_p14.g1)
ACCAG339335AG339336
length727729
length of high quality
(start - end)
183 (129 - 311)557 (67 - 623)
definitionCHROMAT_FILE: MSMg01no131_p14.b1 PHD_FILE: MSMg01no131_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:21 2005CHROMAT_FILE: MSMg01no131_p14.g1 PHD_FILE: MSMg01no131_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC
CGCGGAATTCTAGGCATTTCTGAAAATCTGATACAGATGCCAGGCACTAC
ACTCAGGTCCTGTGGACAAGATGGACCCACTCTTACATTCTAATTCATCT
CTCCAGCCTCCTGGAAGCCTTTGTAATACCTTGCCTAAATGGTCAGTCTA
GGAACAATAAATGCAGAAATAAATTTTGAAAATTACTGAAGTTTTATACC
TGGCCTAACACCAAGGGTTTATTTATGGCTTATCATGTCATTTTATCACT
CCTTTAATCTAGACAAAAACATACTTTTGTTATATATTAACAAACATCTA
TTGAGCACATATCATATACTGACCTACGTTTTCTGTTTCCCATCATCCCA
TTCGGTTCTAGAAGAGGTAGATTCTATTGTTGTATCCGATTTTAGATGAG
AACTAATATGCCAAATGTGTGAACAGCTTGTTTACTTAACAAATAAATAA
AAAGACCAATTATATCTACCCTATTTAAATAAAACATTCAAAGTCATGGT
TGACTTGCAGATTTGACATCCATCACTTGTGAAAAAGCAGGCAACACATA
TTTAATCATTTGCTATTTTATGACTCTGAGTGTATATGCTTAGAGCGAGG
ACAAGTACTTGTTTGAGAATGCGTACGCCTTAACATGCTATGTGTGACGT
CCGACGCCGGTATGACTGAATTATTTA
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXTTTCAAATGGGGGTGACCTA
TAGAAGGATTTCTGAAATTCCAGAGTGTCTGTAACAGTTTGCAATTCCAA
CGAAAATGGAGTTGTGTTCCTCTTTCTCTACATTGTCACCAACATGTGCT
GCCATTCTGATTGGTGTAAGGTTGAATCTCAGAGTCATTTTGATTTGCAT
TTCCTTGATCACTAAGGACTTTGAACATTTCTTTAAGTGTTTCTCAGCCA
TTCAAGATTCCTCTGTTGTTAATTCTCTGTTTAGTTCCATACCCCAATTT
TTGGTTGTGTTGTTTTGTTTATTGGTGGTTAGCTTCTTGAGTTATATATA
TGAAATTAGTCCTCTATCAGATGTGGAGTTAGTGAAGATTTTTTTTCCCA
ATCTGTAGGTTGCTGATTTGTCCTATTGACTATGTCCTTTGCCTTACAGA
AGCTTTCCAGCTTCATGAGGTCCCATTTATCAATTCTTGATCTTAAAGCA
TGAGCCATTGGAGTTCTGTTTAGGAAATTTTCCCCTATGCCAATGAGTTC
AAGGCTCTTTCTCACTCTACTCTCTCTTCTATTAGATTCAGTGCATCTGG
TTTTATGTGGAGGTCCATGACCCACTTGGACTTGAGCTTTGTGAAAGGTG
ACAAATATGGATCTATTTTCATTTTTCTACATACAGATTGCCTGTTAGAC
CAGCACCATTTATTGAAGATGCTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_p14.b1 MSMg01no131_p14.b1 CHROMAT_FILE:
MSMg01no131_p14.b1 PHD_FILE: MSMg01no131_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:21 2005
         (183 letters)



>mm_chr16_24021219_24021801
          Length = 583

 Score =  331 bits (171), Expect = 2e-95
 Identities = 180/183 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcttacattctaattcatctctccagcctcctggaagcctttgtaataccttgcctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 actcttacattctaattcatctctccagcctcctggaagcctttgtaataccttgcctaa 324

                                                                       
Query: 61  atggtcagtctaggaacaataaatgcagaaataaattttgaaaattactgaagttttata 120
           |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 323 atggtcagtctatgaacaataaatgcagaaataaattttggaaattactgaagttttata 264

                                                                       
Query: 121 cctggcctaacaccaagggtttatttatggcttatcatgtcattttatcactcctttaat 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 263 cctggcctaacaccaagggtttatttatggcttatcatgtcattatatcactcctttaat 204

              
Query: 181 cta 183
           |||
Sbjct: 203 cta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)