Query= MSMg01no132_p05.b1 MSMg01no132_p05.b1 CHROMAT_FILE:
MSMg01no132_p05.b1 PHD_FILE: MSMg01no132_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:37 2005
(504 letters)
>mm_chr16_89549976_89550879
Length = 904
Score = 878 bits (454), Expect = 0.0
Identities = 490/502 (97%)
Strand = Plus / Minus
Query: 1 attttatataagggatgagcactttaagtttttttcagtttgtatgccagctcaattata 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 attttatataagggatgagcactttaagtttttttcagtttgtatgccagctcaattatg 643
Query: 61 tctttttttttttaattcaaacatatgtcaacacattttttaatttaaaagggagaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tctttttttttttaattcaaacatatgtcaacacattttttaatttaaaagggagaaaaa 583
Query: 121 aattaaatgtaactaaaattttcagagtagtgccaagtgctagaatccagggaagagtta 180
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 582 gattaaatgtaactaaatttttcagagtagtgcaaagtgctagaatccagggaagagtta 523
Query: 181 gacaaggtgttatagatctttttcttagcgagacaaagcttagtgagagatgccaacaaa 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 522 gacaaggtgttatagatctttttcttagctagacaaagcttagtgagagatgccaacaaa 463
Query: 241 cacgttaggaagagtgagaaaccatgaccccggttccttcataggatcctcaaacactga 300
||||| ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 462 cacgtaaggaagaatgagaaaccatgaccccggttcctttatacgatcctcaaacactga 403
Query: 301 aattatcaagagcattcgaaccatcaaagaccatcttaattagaaaagaggatggtttca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aattatcaagagcattcgaaccatcaaagaccatcttaattagaaaagaggatggtttca 343
Query: 361 tttatctattcttatgtttataaagatttattcacatgtgtatttgtgtatttatttgca 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 342 tttatctattcttatgtttataaagatttattcatatgtgtatttgtgtatttatttgca 283
Query: 421 tacttgtgtatgtttacacaggtgtatgtttacatgcgtattaatgtaggcgagaagaga 480
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 282 tacttgtgtatgtttacacaggtgtatgtttacatgcgtattaatgtaggtgagaagagg 223
Query: 481 gtattagagctcttggagccgg 502
||||||||||||||||||||||
Sbjct: 222 gtattagagctcttggagccgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_p05.g1 MSMg01no132_p05.g1 CHROMAT_FILE:
MSMg01no132_p05.g1 PHD_FILE: MSMg01no132_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:37 2005
(559 letters)
>mm_chr16_89361205_89362162
Length = 958
Score = 973 bits (503), Expect = 0.0
Identities = 545/559 (97%), Gaps = 1/559 (0%)
Strand = Plus / Plus
Query: 1 tcaggggtgaccagtgagccataaactggctatgagttaggatggtataacaatttataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaggggtgaccagtgagccataaactggctatgagttaggatggtataacaatttataa 260
Query: 61 tggaacttggtgctatgattcttgttctcaaataaaatgaatgtgcttgttttatctatt 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 tggaacttggtgctatgattcttgttctcaaataaaatgaacgtgcttgttttatctatt 320
Query: 121 tgtatgactttgtaaataagataatgaaaacacatctagcttttaatgttacattttcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtatgactttgtaaataagataatgaaaacacatctagcttttaatgttacattttcaa 380
Query: 181 actttactatatagatacttccaaatctggatagatagacaagagatgaggaaatactta 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 actttactatatagatacttccaaatctggatagacagacaagagatgaggaaatactta 440
Query: 241 gaatttaggatgctaccacatctgtcctattctacacaaagtgaaacaaagaaatgaaac 300
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaatttaggatgctaccacatatgtcctattctacacaaagtgaaacaaagaaatgaaat 500
Query: 301 acaaacaaaatagaaagaacaaagtcagacagcttaaatcagaggttgacacatctcagg 360
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 aaaaacaaaatagaaagaacaaagtcagacagcttaaatcagaggttgacacttctcagg 560
Query: 361 tattgtcaaatattgtggatgtcaacaagtcacttataaagcaataaaaaaatgaaaata 420
|||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||
Sbjct: 561 tattgtcaaatattgtggatgtcaacaagtcacttagaaagcaataacaaag-gaaaata 619
Query: 421 tttggcaacagaaacaaaatgataatcttgtttaaatgtcactgtaagttgggccttgtg 480
||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||
Sbjct: 620 tttggcaacagaaacaaaatgctaatcttatttaaatgtcactgtaagttgggcattgtg 679
Query: 481 ctctatgcaaagtatgaacgtctcattgaaggagatgatagtcctgcaaggtcaatattt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctctatgcaaagtatgaacgtctcattgaaggagatgatagtcctgcaaggtcaatattt 739
Query: 541 tgactgtttttgttaaaag 559
||| |||||||||||||||
Sbjct: 740 tgaatgtttttgttaaaag 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 958
Length adjustment: 10
Effective length of query: 549
Effective length of database: 948
Effective search space: 520452
Effective search space used: 520452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
