Query= MSMg01no133_a23.b1 MSMg01no133_a23.b1 CHROMAT_FILE:
MSMg01no133_a23.b1 PHD_FILE: MSMg01no133_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:46 2005
(648 letters)
>mm_chr16_92537820_92538867
Length = 1048
Score = 1129 bits (584), Expect = 0.0
Identities = 629/644 (97%), Gaps = 1/644 (0%)
Strand = Plus / Plus
Query: 6 gaattcttgactcgatcct-cctaaacctgcattcagacaaagaacaccagaccctgtca 64
|||||||||||| || | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgactggagcattcctaaacctgcattcagacaaagaacaccagaccctgtca 264
Query: 65 caggctctctagacgttccttggcactaatttgctgccacactgcatgaatggtggtcgc 124
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 caggctctctagacattccttggtactaatttgctgccacactgcatgaatggtggtcgc 324
Query: 125 tgttatagtctgacaattgagtactgagatctgatttgtgctgagtctcatgttacattc 184
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgttatagtctgacaattaagtactgagatctgatttgtgctgagtctcatgttacattc 384
Query: 185 attccaacatcccaggatcagtgggaagagaggggacatagcagacatgacctttgtagc 244
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attccaacatcccaggatcactgggaagagaggggacatagcagacatgacctttgtagc 444
Query: 245 cctggatccctgcagcagatggaatcgtgcttccccaagctttcatatcgaggtcctaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctggatccctgcagcagatggaatcgtgcttccccaagctttcatatcgaggtcctaat 504
Query: 305 cactattaccccagaatgggatttatttggcttgtggctcttcaaagacacaattagcta 364
|||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 505 cactattaccccaggatgggatttatttggcatgtgggtcttcaaagacacaattagcta 564
Query: 365 agttgaaggtgcagaagagaaggttggaccctcctccaatatggcttgctgctaaaagag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agttgaaggtgcagaagagaaggttggaccctcctccaatatggcttgctgctaaaagag 624
Query: 425 gatttaagacagggacacccaaacacagcaagaagacatgcacagactcagctgtacttc 484
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gatttaagatagggacacccaaacacagcaagaagacatgcacagactcagctgtacttc 684
Query: 485 tgtaatcaagagtttaagaagctaggaggaaggccagagacagattctaacctagaaact 544
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cgtagtcaagagtttaagaagctaggaggaaggccagagacagattctaacctagaaact 744
Query: 545 ttagggggagcagggtcccgctcacatcttgacttctgggactatgatagaaaccctttt 604
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 745 ttagggggagcagggtcccgctcacatcttgacttctcggactatgatagaaaccctttt 804
Query: 605 tgttttcagttgttcaagtgtgcaccactaacagagacacacat 648
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgttttcagttgttcaagtgtgcaccactaacagagacacacat 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no133_a23.g1 MSMg01no133_a23.g1 CHROMAT_FILE:
MSMg01no133_a23.g1 PHD_FILE: MSMg01no133_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:46 2005
(617 letters)
>mm_chr16_92700956_92701972
Length = 1017
Score = 1152 bits (596), Expect = 0.0
Identities = 614/624 (98%), Gaps = 7/624 (1%)
Strand = Plus / Minus
Query: 1 agtagagaatctg-------tttttttttaagctggcaagtaatggaattattatgaaaa 53
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 agtagagaatctgttttttttttttttttaagctggcaagtaatggaattattatgaaaa 778
Query: 54 ttttagctttctgtttattcacgggcttatttttattttctattattttggagtacatac 113
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 777 ttttagctttctgtttattcacgggcttatttttattttctattattttggagtgcatac 718
Query: 114 ataaagtgaatcctagagaggctcatggtgtgttagagtccaatttatattttaatgaag 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ataaagtgaatcctagagaggctcatggtgtgttagagtccaatttatattttaatgaag 658
Query: 174 tatatattcatatacacatatatgtatggttgtctattgatgtgtttctatatatacttt 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tatatattcatatacacatatatgtatggttgtctattgatgtgtttctatatatacttt 598
Query: 234 atgatatcattttgccaaataattaaagcttttttgctgattcaaatatacttaaaagga 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 atgatatcattttgccaaataattaaagcttttttgctgattcaaatatacttaaaagga 538
Query: 294 gcaatccacattgtagctgtcataccacataaaataccccaatgaaatcttaaatgatac 353
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gcaatccatattgtagctgtcataccacataaaataccccaatgaaatcttaaatgatac 478
Query: 354 cttcagctctatggcgttcaccattcacacattctgctgttattaaatgactgtgtgact 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 cttcagctctatggcgttcaccattcacacattctgctgttattaaatgactgtgtgact 418
Query: 414 ctctgaaaaaaatgtggcttggcttccgtcaactatgacagagtttattacacttgtcag 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ctctgaaaaaaatgtggcttggcttccgtcaactatgacagagtttattacacttgtcag 358
Query: 474 agcaacggtgacgcaaaattttatgagggcaaaatgtttactaagcaccacgaattttgt 533
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 357 agcaacggtgacgcaaaattttatgaggacaaaatgtttactaagcaccacgaattttgt 298
Query: 534 gggaaagggagaaatattttcaatttgctccttgtaagttatacaggggttgggggggaa 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gggaaagggagaaatattttcaatttgctccttgtaagttatacaggggttgggggggaa 238
Query: 594 aggtatgaagctagaattgagtgt 617
||||||||||||||||||||||||
Sbjct: 237 aggtatgaagctagaattgagtgt 214
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
