BAC Information

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BAC

Clone NameMSMg01-133G19
Chromosome16 (Build37)
Map Location 64,296,017 - 64,296,614
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha3, LOC100043540
Downstream geneCkt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133G19.T7 (MSMg01no133_g19.b1)MSMg01-133G19.TJ (MSMg01no133_g19.g1)
ACCAG340407AG340408
length686691
length of high quality
(start - end)
---623 (69 - 691)
definitionCHROMAT_FILE: MSMg01no133_g19.b1 PHD_FILE: MSMg01no133_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:14 2005CHROMAT_FILE: MSMg01no133_g19.g1 PHD_FILE: MSMg01no133_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTTCGAACCCGCCCGGAANNCN
NGGGATTTTCCCAACCGGGGCANGGAANGCCGNGNCAGNANAGGACNNGA
NCCNCACNAACGACCGCACCANNNNGACAGAAANACCCACCNGCANACGC
CAGGNAACAAACACCGGNNGNAANAGNGGNGNGGNNGACNNGAGAAGNGA
AGNCAAACAAACCGGNGGNGANAGCANGNNACNGGGGGGCNGNAAATTTA
AAAGAAACNNAAAANNCCCCNNGANAANNNAAAGAAANNNCAAAAGCANN
ANGNCNNNAACTTTTTCATTTTANNAAACNNAGGAAAAANNCAGGCNGNC
NAATGCTGCCCCACCCCCACACANAGNAGCNGGNGNANACNNGCAACCCN
AGCACNNGGGANGNGGAGACAGGAAGAACAAGAGNNCAAGGCAGCCCAAA
CCCACNGNGACCNNGNCNNNAAAAAGAAACANAAGCAAGGNGNCAGNGGN
ACACACCNNNAANCCCAGCACCCAAGAGGCAGAGGCAAGCCAAACCCNGA
ACNCNANAAGNCGAAGGCAAGCNCGGCCAACAGAGAAGCCCAGGCCAGCA
AAGGGGACAAAGAGAAACCCAACNCAAAAAAGCAAAAAGGGAACCAACAA
CATTTTTTTTTGTTAAATAAAAATAAGATATTCTGC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGGTGGGTTTACACAAAACAATACACGTGAA
ATTAATTTGGGCATAGATGGATAACTCCATGAAACTTTATAATGCACTCA
CAGGGGAAAAGTATGATTCTTTACCATTACCTGTGTCTCTTACATTTTTT
TACTTGACTTTTAAAAATCGTGGCCTCAGTGGGACAGGATGTCCCTAATC
CTGTAGAGACTTAATGCCCCAGGGTGAGGAAATATGGAGTAAGGGCATAC
CCTCTCAGAGGTAAGAGGAAGTGAGAGGAGAAGGGGAAAGAAATCTATGT
GAGGGGGGGGGAACCAGGAGCGGGAACAACAGTTGGAATGTAAATAAATA
AAGTGATAAATCTAAAAAAAAAGGTGTTTTAAAAGAATATTTTTAGAATA
ACAGGTATTTTTAAAGTACTCTGAAATCAAAACAAATGAAATTTTACCTA
GTTGAGAAAATATTAATAATTGAATCAATAACAAATGAATAAAATGTGGA
TGATCCCTGTGTAATTTTTAGTATCAACGCTGTGGGCCTTGCCCAGTACT
ATCAGATTAGCAGGAACTGGTTAGTTAGCTGGCTGCATACCTATACATTA
TCTTTCCGTTGTTCTTTGAAAGGTTCAAGTCTCTCTAGACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_g19.g1 MSMg01no133_g19.g1 CHROMAT_FILE:
MSMg01no133_g19.g1 PHD_FILE: MSMg01no133_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:14 2005
         (623 letters)



>mm_chr16_64295817_64296840
          Length = 1024

 Score = 1081 bits (559), Expect = 0.0
 Identities = 590/603 (97%), Gaps = 8/603 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggtgggtttacacaaaacaatacacgtgaaattaatttgggcatagatggataactcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggtgggtttacacaaaacaatacacgtgaaattaatttgggcatagatggataactcc 260

                                                                       
Query: 61  atgaaactttataatgcactcacaggggaaaagtatgattctttaccattacctgtgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaaactttataatgcactcacaggggaaaagtatgattctttaccattacctgtgtct 320

                                                                       
Query: 121 cttacattttttt-acttgacttttaaaaatcgtggcctcagtgggacaggatgtcccta 179
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttacattttttttacttgacttttaaaaatcgtggcctcagtgggacaggatgtcccta 380

                                                                       
Query: 180 atcctgtagagacttaatgccccagggtgaggaaatatggagtaagggcataccctctca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcctgtagagacttaatgccccagggtgaggaaatatggagtaagggcataccctctca 440

                                                                       
Query: 240 gaggtaagaggaagtgagaggagaaggggaaagaaatctatgtgagggggggggaaccag 299
           ||||||||||||||||||||||||||||||||||||||||||||    ||||||| || |
Sbjct: 441 gaggtaagaggaagtgagaggagaaggggaaagaaatctatgtg----gggggga-ccgg 495

                                                                       
Query: 300 gagcgggaacaacagttggaatgtaaataaataaagtgataaatctaaaaaaaaa--ggt 357
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||
Sbjct: 496 gagcgggaacaacagttggaatgtaaataaataaagtaataaatctaaaaaaaaaaaggt 555

                                                                       
Query: 358 gttttaaaagaatatttttagaataacaggtatttttaaagtactctgaaatcaaaacaa 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gttttaaaagaatatttttagaataacaggtatttttaaagtactctgaaatcaaaacaa 615

                                                                       
Query: 418 atgaaattttacctagttgagaaaatattaataattgaatcaataacaaatgaataaaat 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 atgaaattttacctagttgagaaaatattaataattgaatcaataacaaatgaataaaat 675

                                                                       
Query: 478 gtggatgatccctgtgtaatttttagtatcaacgctgtgggccttgcccagtactatcag 537
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 676 gtggatgatccctgtgtaatttttagtatcaaagctgtgggccttgcccagtactatcag 735

                                                                       
Query: 538 attagcaggaactggttagttagctggctgcatacctatacattatctttccgttgttct 597
           |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 736 attagcaggaactggttagttagctggctgcacacctatacattatctttctgttgttct 795

              
Query: 598 ttg 600
           |||
Sbjct: 796 ttg 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1024
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1014
Effective search space:   621582
Effective search space used:   621582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)