BAC Information

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BAC

Clone NameMSMg01-134B18
Chromosome16 (Build37)
Map Location 77,564,903 - 77,565,292
singlet/doubletsinglet
Overlap gene2810055G20Rik
Upstream gene1700063K16Rik, LOC665120, Usp25
Downstream geneLOC435483, LOC100039561, Cxadr, Btg3, D16Ertd472e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134B18.T7 (MSMg01no134_b18.b1)MSMg01-134B18.TJ (MSMg01no134_b18.g1)
ACCAG340905AG340906
length1,1651,160
length of high quality
(start - end)
391 (469 - 859)313 (499 - 811)
definitionCHROMAT_FILE: MSMg01no134_b18.b1 PHD_FILE: MSMg01no134_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:11 2005CHROMAT_FILE: MSMg01no134_b18.g1 PHD_FILE: MSMg01no134_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATTTTTNNNNNAATCATTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCCATCATTTAAGACTGCCATTTTTCCCGAGTTTCTTGATG
CAAACTATAATAGTACGCCTTTGATCACAATTGGTCCACTCTTCTTTTAG
CAAAAGGTTCCTATGGTATTTTTATCAGGTGCTTCCCTGTTTAAAATCTA
AAAATAAGTCACCACTTACATTACTAACATAGATTTCCACTTTAGAATTT
CATGAGCAAAAATAAATACATGGTTGTATTTCTGGTAGCAAGAACATATT
AGAAAATAAATCTCGTTCACATTGAAGGTCTAATATAAGTAGCCTTTTAT
AGCACAACAATTGGTTTTCCAGTACCAAAAGGTCACTCCTGAAAACATAC
GTACTATCAATGTAATATGGACTCAACAGGTCATACTCAGGAATATATGT
TATATATTAATACATATATGCATGTAATAAAATTAGTTAAAAAGAAAACA
TGAATTCATAGAGCAACTAGATGTGGTTTGAGGGTTTAGAGGAATGGAAG
GGATAAATATAATTTATTATAATTTCAAAAAATAAAAAATGATACAAATA
AAAAACAGACATAATGAGTCTTTCAAGAAAGAGATGAAAACTGTTTAAGA
GCACTTTTATAACAAATCCAGAAATATTTACAAGAGTTTGGCTTCTCTCT
TCTTGNAAAATATATAGAAAAGTTCATTTAAATAGTTATATGATCAAATA
TTTGCACAATTATTATTATTAAAGTTAATTTAAATGACAATTTTACTATG
CATGTATGTGCATTTTAAGTTAAATGCATAAATTGTGATCATGCATAAAT
CTGCACCAAATAGTAGTTATTAAATCTATTTTGTAATATTCTTAAGATTT
TGTTTTGTGGTTTTAAAGTCTGCCTCACATCTTTTCACACATTATTTGTT
TCCTCCCCAAAATTTAATGAACAAAAAAGCCAATTTTTTTTGTATAATTT
ATCAATATATTCCATATTTTTTTACCATTTTCGCGGTTTAAAAATTGTTA
GGGATTAAATGAATTTTTACTAGTTCTTGTGAACCCCCCTTTTTTATAAA
AGCTTTTATAACTTCCCAATTTTTATAAAAAATAAAATTTTTTCATTTCG
CTTTTAAAATTTTTC
NCCAGGCGTTNNNNAGAGATGTGAGCTGGXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTTTACACCCCTAAGCCCCTTAGC
CCATAAAATCCCCCTCCTTTCAGAGCCCCGTGGCCCACATCCATTATCTC
CTGTGTGGGGTTCATGTAGGTCTGGAGCTCCGTCATTTTCCTAACTCATG
CCCTTACATCAGGGCAGTCTATTCATGATTCTTTGGATACACGCCGAATC
GGGAATTGAATGGGGGTTTCCCCACTAGGTTCTATCATTTGGAGGCCCCA
GCGAGATCTGTGTGACACCCAGGAACCTCGAAAGACCGCTTGAAGGTACA
TTTGTTTGTGTGAGTCTTGTATGTTGTCTGTTGTCTAAGTGTGACACTGC
TGATTTTACATCTTGGTTTTTCAGTTCTAAGATTGTGGGTTCGAGTCCCA
CCTTTTTTCTTGCCCTTTCAGTTCTGAGATTGTGGGTTCAAGAACCACCT
GGTTTCCCAGTTCTGGTATTCTGTATTCTGGCAGCAGCCACTGTGGATCG
TGAGGACCTAGTGGCTGCGGGGGAAAAAGACGTTCTAAGGCCCCGCAGGC
TGAAACCCTAGAAAAAGTGCCCAGGGTGAGGGACAGTGAAAAAGTCTGAC
TGTCATCTGGCAGAGTGAGAAAAATAAGGTGCTTTTTCTGCCAGAAAGGG
AGTTGATGTAGAATCTGTCCCCTGTCATGAAGTTGAGTTTGGCTGGTTGT
ACAAGAAAGGCATAGACGAGTGTGGTTAGATATACTGGTGTCTTTTTTCT
CTGTTGTTGTCTTGTTTTTGTTTGTGGTTTTTGTCATGGGACACAGACCC
CACACATCGGAGGTAAAGTGAAATCCTTCCCTGCATGTCTGCCTGCCCTG
TTCCACTTGTGTGTCCTCCATTANACCAACTTCTGATTCCGGTTTGGCTT
TTGGGTTGCCCGGGTTCCGGCCCGGGTTTATCCCCCCAAGGGTGGACCAA
ATATCCTGGGTGTGGGTTTTAGGCCCCTCCCCCCGGGCTGGGGGGCCCCT
CCCCCGGGGGTAGAAGAGCCCCTTTTTGTTTTGGTTTGTCCTTCCCCCTC
AAAAAATGGTCTCACCACATTTTTTGGTCCCCCACTGCTTGGGTCGGAAG
CCCCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_b18.b1 MSMg01no134_b18.b1 CHROMAT_FILE:
MSMg01no134_b18.b1 PHD_FILE: MSMg01no134_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:11 2005
         (391 letters)



>mm_chr16_77564703_77565493
          Length = 791

 Score =  688 bits (356), Expect = 0.0
 Identities = 382/391 (97%), Gaps = 1/391 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcatgtaataaaattagttaaaaagaaaacatgaattcatagagcaactagatgtggtt 60
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 201 tgcatgtaataaaattagttaaaaagaagtcatgaattcatagagcaactagatgtggtt 260

                                                                       
Query: 61  tgagggtttagaggaatggaagggataaatataatttattataatttcaaaaaataaaaa 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagggtctagaggaatggaagggataaatataatttattataatttcaaaaaataaaaa 320

                                                                       
Query: 121 atgatacaaataaaaaacagacataatgagtctttcaagaaagagatgaaaactgtttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgatacaaataaaaaacagacataatgagtctttcaagaaagagatgaaaactgtttaa 380

                                                                       
Query: 181 gagcacttttataacaaatccagaaatatttacaagagtttggcttctctcttcttgnaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 gagcacttttataacaaatccagaaatatttacaagagtttggcttctctcttcttgaaa 440

                                                                       
Query: 241 aatatatagaaaagttcatttaaatagttatatgatcaaatatttgcacaattattatta 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 aatatacagaaaagttcatttaaatagttatatgatcaaatatttgcacaagtattatta 500

                                                                       
Query: 301 ttaaagttaatttaaatgacaattttactatgcatgtatgtgcattttaagttaaatgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
Sbjct: 501 ttaaagttaatttaaatgacaattttactatgcatgtatgtgcattt-atgttaaatgga 559

                                          
Query: 361 taaattgtgatcatgcataaatctgcaccaa 391
           |||||||||||||||||||||||||||||||
Sbjct: 560 taaattgtgatcatgcataaatctgcaccaa 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)