BAC Information

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BAC

Clone NameMSMg01-134H08
Chromosome16 (Build37)
Map Location 45,646,783 - 45,647,182
singlet/doubletsinglet
Overlap geneBC016579
Upstream geneBC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2
Downstream geneTmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110, Pvrl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134H08.T7 (MSMg01no134_h08.b1)MSMg01-134H08.TJ (MSMg01no134_h08.g1)
ACCAG341168AG341169
length1,2121,180
length of high quality
(start - end)
406 (49 - 454)613 (133 - 745)
definitionCHROMAT_FILE: MSMg01no134_h08.b1 PHD_FILE: MSMg01no134_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:53 2005CHROMAT_FILE: MSMg01no134_h08.g1 PHD_FILE: MSMg01no134_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGTATTNNNNAAACACTGCGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACCTGACTTCAACCACACGATAGCAATCTGCAAAGAGAGATT
CACTTTCCTTTAAAACCTTTAATTATTTTTTTTCCCCCTTTTTTGAGATG
TGAAAGACTGTACTCCAAAATTTCAGAACAGCTTTTTTCCATTATCATGC
CCACTTAATTTTAATTTGATTGCAGATTTGCATCTTAACATATGTTAATC
TTATACAAGAAATTACAAAAATATTCTTTTTTCCCCCCCTTCTAGGGAAG
CACTTATTTTATGTGGCGTCTTGCCTGTCAGGCACCAAGGCTTTCAGGGA
GAATTACAGTAGATTAAAGAAATGTCAACTACTTAAAGGACTTTAAATTT
GATAATAATACCTGTTCAGTTAATGCTCTGGCTAGTTTTATGTCACTGGG
GATTTTTTTAGCCCCCCCTAAGAAAGTGCCTTCCAAAGATCAAAATGGAG
GCAAGCTTGTAAGGCATTTTCTTAGTTAGAAATTGATGGGAGAGGGCCCA
GCCCATTGTGGGCTACCCCTGGGCAGGTAGTCCTGAGTTGTAGAAGAAAG
CAGACTGAGCAAATCATGGGGAACAAGGCAGGAAGCAGCACCCCTGTAGG
TAGGAGGTCTACCTCCAGGTTGCTGCCCTGCTTGAATTCCTGTCTTGGCC
CCCTTTGACGACGAGCAGTCATATGGACACATAAGCCAAAAAACCCTCTT
TCTTCCTTTTTGTTGATGGTGTTTCATCATAGCAATCGAAACCCCAACTA
AGACAGTTAACATATACCACTCATAGTTTGCTGTAATTCCTTTTTATCCC
TCCTTGGCATTTTGAATTATTTTGAGAATAAATTTTAAGACAGTCGCCTT
TCTTTAAGGTTTTAATAAAACTTCCAACATCATTTTGGTTGATCTTTAAA
AAATCCAGGTAGTAATCTGAATGTGAACGCTTTACACCCCCGTAATAATA
TAAAGGATTTGAGACCATCGGCCTGAACCTGATCGGCGAATATGGTATAC
CCCCCCCATAACTTGTTCTGTCTTTAAAATTTGGCTAAGTAATTCATTGA
ATTTTTTGATTCCTTGCCCCCATCCCCTAGTTTTTTTTGTATAGTCAACA
CCCTACTTTTCTTAAAACTATTTTTATCTTTTCCTGTCTAATCATAACCA
AAAAAGTGCTGC
CTTTTTTTTAAGATTGGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTTTATTTAGCTCTGCAACCCATTTTTAA
TAAGGTTATTCTTTTAAATGGAGTCTAACCCCTAGAGTTCTTTGTATATT
TTGGATATTAGCCCTCTGTCATATGTAAGATTCTTAAAAATTTTTTCCCA
ATCTCTGGGATGCTGTTTTGTCCTATTGACAGTGTCCTTTGCCTTACAGA
AGCTTTTCAATTTTATGAAGTCCCATTTTTTGATTACTGATCTTAGATCA
TAAGCCATTGGTGTTCTGTTCAGGAAATTTTCCCCCGTTCCCATGTGTTT
GAGGCTCTTCCCCACTTTCTCTTCTATTAAATTCAGTGTATCTGGTTTTA
TGTGGAGATCTTTGATCCACTTGTACTTAAGCTTTATATAAGAAGATAAT
AATGGATCAATTTGCATTCTTCTACATGCTGACCTCCAGTTGAACCAGCC
CCATTTGTTGAAAATGCTATCTTTTTTCCACTGGATGGTTTTAGCTTCTT
TGACAAAGATCAAGTGACCATAGGGGTGTGGGTTCATTTCTGGGTCTTCA
ATTTTACTCCATTGATCTACCTGCCTGTCACTGTACTAGTACCATGTAGT
TTTTTATCACTATTGCTCTGTAGTACAGCTTGAGGTCAGGGATGATAATT
TTCCCAGGAGTTCTTTTATTGTTGAGAATAGTTTTTGCTATCCTGGGCTT
TATGTTATTCCAAATAAATTTGAAAATTATTCTTTATAACTCTATTGAAA
CTGAGTTGGAATTTTGATGGGGTTTATATTGAAACTGTAGATTGCTTTTG
GTAGAGTGGCCATTTTTACTATATTAATCATGCTGATCCATGAGCTTGGT
AGATCTTTCCATCTTTCTGAGTCTTCTTCGATTTCTTTTCTTCAAAACTT
GAATTTATTGTCCTACCTAAATTTCTCTTTGTTTGGTTAAAGTCCCACTC
AAAAATTTTATATTACTTGTGAATTTGGTTAAAGGCGGTTGTTTCCCTAT
ATTCTTTTTCTCTTTGGGGTATCCTTTTTTAATTAACAACAGCTCTCGGT
TTTTTCTAACCTTTTATTTTAACCCCCCCCCCCTCTTCCTACATATTTTT
TCTCTCTTTATCAAACTCTCCTCTTGTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_h08.b1 MSMg01no134_h08.b1 CHROMAT_FILE:
MSMg01no134_h08.b1 PHD_FILE: MSMg01no134_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:53 2005
         (406 letters)



>mm_chr16_45646580_45647384
          Length = 805

 Score =  665 bits (344), Expect = 0.0
 Identities = 387/408 (94%), Gaps = 15/408 (3%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacctgacttcaaccacacgatagcaatctgcaaagagagattcactttccttt 63
           |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 603 ggaattcacctgacttcaaccaca-gaaagcaatctgcaaagagagattcactttccttt 545

                                                                       
Query: 64  aaaacctttaattattttttt-----tcccccttttttgagatgtgaaagactgtactcc 118
           ||||| |||| ||||||||||     |     ||||||||||||||||||||||||||||
Sbjct: 544 aaaacatttatttatttttttttaaat-----ttttttgagatgtgaaagactgtactcc 490

                                                                       
Query: 119 aaaatttcagaacagcttttt--tccattatcatgcccacttaattttaatttgattgca 176
           |||||||||||||||||||||  |  ||||||||||  ||||||||||||||||||||||
Sbjct: 489 aaaatttcagaacagctttttaat--attatcatgcaaacttaattttaatttgattgca 432

                                                                       
Query: 177 gatttgcatcttaacatatgttaatcttatacaagaaattacaaaaatattcttttttcc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gatttgcatcttaacatatgttaatcttatacaagaaattacaaaaatattcttttttcc 372

                                                                       
Query: 237 cccccttctagggaagcacttattttatgtggcgtcttgcctgtcaggcaccaaggcttt 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cccccttctagggaagcacttattttatgtggcgtcttgcctgtcaggcaccaaggcttt 312

                                                                       
Query: 297 cagggagaattacagtagattaaagaaatgtcaactacttaaaggactttaaatttgata 356
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 311 cagggagaattacagtagattaaagaaatgtcaactacttaaaggactttaaatttgaaa 252

                                                           
Query: 357 ataatacctgttcagttaatgctctggctagttttatgtcactgggga 404
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ataatacctgttcagttaatgctctggctagttttatgtcactgggga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 805
Length adjustment: 9
Effective length of query: 397
Effective length of database: 796
Effective search space:   316012
Effective search space used:   316012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)