BAC Information

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BAC

Clone NameMSMg01-134H24
Chromosome16 (Build37)
Map Location 85,070,160 - 85,070,793
singlet/doubletsinglet
Overlap geneApp
Upstream geneEG621729, LOC640489, LOC665664, LOC547311, LOC100039893, LOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311
Downstream geneCyyr1, LOC100039994, LOC622000, Adamts1, Adamts5, LOC100040025
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134H24.T7 (MSMg01no134_h24.b1)MSMg01-134H24.TJ (MSMg01no134_h24.g1)
ACCAG341199AG341200
length1,1121,127
length of high quality
(start - end)
253 (209 - 461)636 (128 - 763)
definitionCHROMAT_FILE: MSMg01no134_h24.b1 PHD_FILE: MSMg01no134_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:58 2005CHROMAT_FILE: MSMg01no134_h24.g1 PHD_FILE: MSMg01no134_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATTAANNNNNNAAACATCTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCATCAATGTAATCCCCTTTATAAACCCCCTCAAAGAC
AAAAACCACATGATCATCTCCTTAAAAGCCCAGAACCCATTTGACAAAAT
CCAACACCCATTCATGATAAAAGTCTTGGAAAGATCAGGAATTCAAGAAC
CATACCTAACCATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATC
AAAGTAAATGGTGAGAAGCTGAAAGCAATCCCACTAAAATCAGGGACTAG
ACAAGGCTGCCCACTTTCTCCATACCTATTCAACATAGTATTTGAAGTCC
TAGCCAGAGCAATTCGACAACAAAAGCAGATCAAGGGGATACAAATTGGA
AAAGATGATTTCAAAATATCACTTTTTGCAGATGATATGATAGTATATAT
AAGTGACCTTTTTTATTCCACCAGAGAACTCTTAAACCTGATAAAAAAAT
TCAATGAAGTAGCTGGATATAAAATTAACTCAAACAAATCAATGGCCTTT
CTCTACACAAAGGATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACC
CTTCACAATAGTCACAAATACTATAAAATACCTTGGCGTGACTCTAACTA
AGGAAGTGAAAGAGAGGAGCACTCCTCCATTGTTGGTGGGATTGCAAGCT
TGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGAACA
TAGTACTACCGGAGGATCCCGCAATACCTCTCCTGGGCATATATCCAGAA
GATGTCCCAACGGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGC
CTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTAAACAG
AGGAATGGATACCAAAAATGTGGTAAATTTACACAATGCAANAACTACTC
AGCTATTAAAAATAATGAATTTGTGAAAATTCCCAAGGCAAATGGGTTGG
AACCCGGAAGGGCCATTCTTCCTGGAGTGAGGGTAACCACCATCCCCAAA
AAAAACTCAAAAGGAATTTGGACCCTCCCCTGGAAAAACGGGAAATATAT
AACCCACCAAAC
NCCAATCTCNNNNAAATGATGGNAGCCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCCTTAAAGGCCCTTCTAAGCTTTCCG
TGGTCTGCTATGGCCTTTAAAACTCCTGCCCCCACAGATGCCTGGGCCTG
TGTGTGCATGTACTGGTACCTGACGGTTAAAATCTTTGGAATCCAAGGAA
AAGCCTGTCACTTGTGTTGATGACAGAGAAAAAAAACAAAAACAAAAAAC
AAAACAAAAAAAAAACCAACAACAACAAAAATCCCCATTCAATGTAGGGG
GTTAAATCAGAGACTACGGATGTCATAAATGTGTATCTAAAATGGTTATA
TGGTCAATTCCCAATTTGCATGGGTAGAAACAATACTGTCAAGCTGAAGG
TATTTATAAGGCCTCCCGGTTTCAGATGCTCTATGTCCTGCATTGCTAAG
GGAGTGTCAGCATGAGTATTGCATGAGTATTGCATGAGTAGTGAATGGGT
CTGGAGCCTTGTGGGATAGGTGCCTGGCAATGCTGTGTCAATGGACTTAG
GACCTGCATACTCCTCAATTAAATGAGGGGCCGCTGTCCCAGGAATACCC
TGGACACACATTTTCATAAAGCCAAAGTCTTTCATTACTACATCTGATAC
TTGTACAACTCAGCTCCAGCTCTAACAACACTGGCTATAAAATTCTGCTG
AAGGCCGATTAACATGACAATCAACAGTTCTACAATGGGAAGCCGATGAA
CAGCATATTCCAGGGGGCAGAAGATTAAAAATTTAATCTGCTCTTACTTG
CAATTCTTCTCTATTTCGGAAATATATAACTGAGATATAAAATGGAAGGT
TTTCAGATGTGGAAATTGAAAGTTTAAACAGTCATTAAGTTTCTATTTTA
AAAATATCCAAGAGAAACCCAAGTCCAACCACAACTTAATTTAATGGGCA
ATTTTTCAGTCCTAAGGAAATCTTTAAATTTTTGGTTTCTTTTTTTGCAT
CTTTAAAAAAAATTTTTTGGGATTTTTTTAAAAAAAATAAAAACCGGCCT
TATTAAAAAAAGGGGAGGATTCCCTCCCCTCCCCCTTGTGTTTTCCCAAA
AAGACTGTGTTTTTAATAAAAGATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_h24.g1 MSMg01no134_h24.g1 CHROMAT_FILE:
MSMg01no134_h24.g1 PHD_FILE: MSMg01no134_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:58 2005
         (636 letters)



>mm_chr16_85069958_85070993
          Length = 1036

 Score = 1125 bits (582), Expect = 0.0
 Identities = 621/634 (97%), Gaps = 1/634 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   cccacagatgcctgggcctgtgtgtgcatgtactggtacctgacggttaaaatctttgga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||
Sbjct: 203 cccacagatgcctgggcctgtgtgtgcatgtactggtacctgacggttaaaatccaggga 262

                                                                       
Query: 64  atccaaggaaaagcctgtcacttgtgttgatgacagagaaaaaaaacaaaaacaaaaaac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atccaaggaaaagcctgtcacttgtgttgatgacagagaaaaaaaacaaaaacaaaaaac 322

                                                                       
Query: 124 -aaaacaaaaaaaaaaccaacaacaacaaaaatccccattcaatgtagggggttaaatca 182
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaaaaaaaaaaaaaaaccaacaacaacaaaaatccccattcaatgtagggggttaaatca 382

                                                                       
Query: 183 gagactacggatgtcataaatgtgtatctaaaatggttatatggtcaattcccaatttgc 242
           ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 383 gagactatggatgtcataaatgtgtatctaaaatggctatatggtcaattcccaatttgc 442

                                                                       
Query: 243 atgggtagaaacaatactgtcaagctgaaggtatttataaggcctcccggtttcagatgc 302
           ||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct: 443 atgggtagaaacaatactgtcaagctgaagggacttagaaggcctcccggtttcagatgc 502

                                                                       
Query: 303 tctatgtcctgcattgctaagggagtgtcagcatgagtattgcatgagtattgcatgagt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tctatgtcctgcattgctaagggagtgtcagcatgagtattgcatgagtattgcatgagt 562

                                                                       
Query: 363 agtgaatgggtctggagccttgtgggataggtgcctggcaatgctgtgtcaatggactta 422
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agtggatgggtctggagccttgtgggataggtgcctggcaatgctgtgtcaatggactta 622

                                                                       
Query: 423 ggacctgcatactcctcaattaaatgaggggccgctgtcccaggaataccctggacacac 482
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 623 ggacctgcatactcctcaattaaatgaggtgccgctgtcccaggaataccctggacacac 682

                                                                       
Query: 483 attttcataaagccaaagtctttcattactacatctgatacttgtacaactcagctccag 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 attttcataaagccaaagtctttcattactacatctgatacttgtacaactcagctccag 742

                                                                       
Query: 543 ctctaacaacactggctataaaattctgctgaaggccgattaacatgacaatcaacagtt 602
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 743 ctctaacaacactggctataaaattctgctgaaggccgattaacatgacaatcaacggtt 802

                                             
Query: 603 ctacaatgggaagccgatgaacagcatattccag 636
           ||||||||||||||||||||||||||||||||||
Sbjct: 803 ctacaatgggaagccgatgaacagcatattccag 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)