BAC Information

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BAC

Clone NameMSMg01-134M03
Chromosome16 (Build37)
Map Location 70,880,320 - 70,881,033
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664930, Gbe1, D16Ertd519e
Downstream geneLOC100039231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134M03.T7 (MSMg01no134_m03.b1)MSMg01-134M03.TJ (MSMg01no134_m03.g1)
ACCAG341393AG341394
length1,1421,201
length of high quality
(start - end)		725 (124 - 848)829 (100 - 928)
definitionCHROMAT_FILE: MSMg01no134_m03.b1 PHD_FILE: MSMg01no134_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:29 2005CHROMAT_FILE: MSMg01no134_m03.g1 PHD_FILE: MSMg01no134_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCATTTCTTTNNNNNCCAGTGCGCGCTATXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTCTTGATACTTTATCCCTTAAGCATTTTTCATTTAC
AGCATATATCCCTGGTTGCCCTTTAACTGTGCTGCATATATTGGAAGAGG
AGATCACCCCATTTGTCTTTGAACTGAAGGTACATTGCACTCAGCTACTG
ATAACGATTTGCCTAGTTATTCAAACATCTTACTTTAAAACAGTTTCACA
TGATTGGATGTGAAAAAGATAATTAAAAAACGGTTAACCCGTGGTTTAAG
AAATGGTTGGGGTTAATAGGATGATTTGAAATTTTCTCCTATAGTAAAAG
TATAACTTACTTTTATAAATAATAATACTGCTCTCTCTTAAGCACTCCAT
GAAATAACTTCCTGTCGTTAAATTTTTGACCAACTCTCTCTCTCTCTGAC
ACACACATACACACACAAACACACACACACAGACACACAGACACGCAGAC
ACACACACACACACACACACACACACACACAGACACACACCTGTAGTTAT
ATGATCATCTACAGCAAGTATTCTGAATTTAATCCCCAGAGGGAAAGAAA
AAAAATTAACTTTAGCCACTCAAGGAGAATCTGTTTTATTCTTTTGTGAA
TCGCTAGCATTTTCCTCAGGATATTTCCAAACCAAGTTTGAAGAACCCAC
TGCTTCTACAGCCTTCATTATCCCACTGTTCGGGTCTGAAATCAGATGGA
CTATTTCAGTTTGCACTGTGAAGTTTTCGGTAGCTGGGCTTATTACCATA
CATCTGTTTAAGCAGACTCCTATTTGCTCCTAGTCTGCTCTTCTTCCTTT
CTTTTGGGTTTGCTGCATGATTTCCCTGTCCTCACTGTCTGGCAGCTTTG
GGTTTTCCTTGAGCAACTTAAAAAAAGTTTGCTTCCCTCTCCCTTATAGG
CTCTCCTTTGGAAGCATTTAAAAGGGTTTTTGTTGGGGGCCCACTGGTTT
CCTTGGGGGGGAAAGGGAAAAAAAAAAAAGCTTGGGGGCCATTCCCCTTG
GCCTTACATTAAAGGGGAACCCCCTGTGGGTGAATTAAAGTCCGATTTGA
ACAAACACGCCGGCACAAAAAAAATTGTCTCCCGGTATGTTA

NCCCCAACCCTNTNNNTACCATGTGAGGCTGGGGXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAAAGGCCCTGAAGGNA
AAACACAACCAAACTTATGGGCCCCTAGGAAAGCAGTAACAAGAGGAAAG
TTCCTTGACACTAAGTCCCTTTATAAAGAAACTGAAGGGATCTCATGCTA
GCAACTTAAAAGCACACCTGAAAGCTCTAGGACAGAAAGAAACAAACACA
CCCAAGATAAGTAGATGACAGGAAATAATAAATCTCAGGATCAAAATCAA
CACATTAGAAGCAATGAGAACAATAAAAAAAAAATGAAACTAAGAGCTGG
TTCTTTGAGAAAAATCAAGAAGTTAGACAAACCCTTAGTCAAACTGACAA
AAATGCAGATGCAGTATCCAAATTAAGAAACTTGAAAATGAAAAAGGGTG
CATAATAACAGATACTGAGGAAATCCAAAGAATCATTAGGTTCTACTTCA
AAAACCTGTACTCCACAAAATTGGAAAACCTAAATGAAAAAGATGATTTT
CTTAATACCTTTTTTCACTTACCAAATTTGAATAAAAATCAGGTAAACTA
TTCAAATAGTCCTATAATCCAAAGGAAATAGAAGCAGTCATTAAAAAGTC
TACCACATTATCCCCCCAAAATTCCCCAAAACTCATTAAAAAGACAAAAC
TAGAAACAAAACAAAACAAAAATACAGCCACATGGTTTTAAAGCAGACTT
TCAAAGAAGAGTTAATACCAAAACTTCTCAAATTATTCCACAAAATAGAA
ATAGAATAAGCACTGTCAAACTCATTTTATGAGGCAACAGTCAACTTGAT
GTCTACATCACACAAAGACTCAACAAAAAAAGAGAATTTCAGACCAATTT
TCCTTATCAATATTTGAGGGTCTCACTGTTTTGGNCAATCTTTGGCCCAT
ACAATTCACAAGGGCACTGGGATCAGATTTGGCAAGCATTGGTTCGGAAA
CCCTGAGTACATGTAAAGGGGTACTACCTGTAGAAGGTTGAACAACTTTA
CTTAGGGGGGACTGAAGGTTTTAAAAAATATGGGGAGACTAAAGGTAGGG
GAGATCCGGATGTCCTTGGCTGGGGGGGCTTAGGAAAATTTCTATGCCTC
CTTAACTAAGGGAGAATTTCCGGATTCCCAAATACGGGGTGAAAAGTTTT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_m03.b1 MSMg01no134_m03.b1 CHROMAT_FILE:
MSMg01no134_m03.b1 PHD_FILE: MSMg01no134_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:29 2005
         (725 letters)



>mm_chr16_70880120_70881245
          Length = 1126

 Score = 1288 bits (666), Expect = 0.0
 Identities = 703/716 (98%), Gaps = 5/716 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taactgtgctgcatatattggaagaggagatcaccccatttgtctttgaactgaaggtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taactgtgctgcatatattggaagaggagatcaccccatttgtctttgaactgaaggtac 260

                                                                       
Query: 61  attgcactcagctactgataacgatttgcctagttattcaaacatcttactttaaaacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgcactcagctactgataacgatttgcctagttattcaaacatcttactttaaaacag 320

                                                                       
Query: 121 tttcacatgattggatgtgaaaaagataattaaaaaacggttaacccgtggtttaagaaa 180
           |||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||
Sbjct: 321 tttcacatgattggatgtgaaaaagataattaaaaa-cggttagcctgtggtttaagaaa 379

                                                                       
Query: 181 tggttggggttaataggatgatttgaaattttctcctatagtaaaagtataacttacttt 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 380 tggttggggttaataggatgatttgaaactttctcctatagtaaaagtataacttacttt 439

                                                                       
Query: 241 tataaataataatactgctctctcttaagcactccatgaaataacttcctgtcgttaaat 300
           |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 440 tataaataataa-actgctctcttttaagcactccatgaaataacttcctgtcgttaaat 498

                                                                       
Query: 301 ttttgaccaactctctctctctctgacacacacatacacacacaaacacacacacacaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttttgaccaactctctctctctctgacacacacatacacacacaaacacacacacacaga 558

                                                                       
Query: 361 cacacagacacgcagacacacacacacacacaca--cacacacacacacagacacacacc 418
           ||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 559 cacacagacacacagacacacacacacacacacagacacacacacacacagacacacacc 618

                                                                       
Query: 419 tgtagttatatgatcatctacagcaagtattctgaatttaatccccagagggaaagaaaa 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgtagttatatgatcatctacagcaagtattctgaatttaatccccagagggaaagaaaa 678

                                                                       
Query: 479 aaaa-ttaactttagccactcaaggagaatctgttttattcttttgtgaatcgctagcat 537
           |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 679 aaaaattaactttagccactcaaggggaatctgttttattcttttgtgaatcgctagcat 738

                                                                       
Query: 538 tttcctcaggatatttccaaaccaagtttgaagaacccactgcttctacagccttcatta 597
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 739 tttcctcaggatatttccaaaccaagtttgaagaacccactgcttctacagcgttcatta 798

                                                                       
Query: 598 tcccactgttcgggtctgaaatcagatggactatttcagtttgcactgtgaagttttcgg 657
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tcccactgttcaggtctgaaatcagatggactatttcagtttgcactgtgaagttttcgg 858

                                                                   
Query: 658 tagctgggcttattaccatacatctgtttaagcagactcctatttgctcctagtct 713
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 tagctgggcttattaccatacatctgtttaagcagactcctatttgctcctagtct 914


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 725
Length of database: 1126
Length adjustment: 10
Effective length of query: 715
Effective length of database: 1116
Effective search space:   797940
Effective search space used:   797940
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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