Query= MSMg01no134_o16.b1 MSMg01no134_o16.b1 CHROMAT_FILE:
MSMg01no134_o16.b1 PHD_FILE: MSMg01no134_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:49 2005
(255 letters)
>mm_chr16_65838069_65838723
Length = 655
Score = 397 bits (205), Expect = e-115
Identities = 234/245 (95%), Gaps = 5/245 (2%)
Strand = Plus / Plus
Query: 13 tctaacctcttc--a-acatttaactcctattcagccattctaattcacgatagttacca 69
|||||||||||| | || | ||||||||||||||||||||||||||||||||||| ||
Sbjct: 212 tctaacctcttcgtagacct--aactcctattcagccattctaattcacgatagttagca 269
Query: 70 ctttttcagctctttttgtgggcttgctcttgaaagcatcttcacatgtcatgttctttc 129
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ctttttcggctctttttgtgggcttgctcttgaaagcatcttcacatgtcatgttctttc 329
Query: 130 cttgtgttcctcctgatggtgatcaacagtgacagttatgtgtgtctgttagctttctct 189
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 330 cttgtgttcctcctgatggtgatcatcagtgacagttatgtgtgtctgttagctttctct 389
Query: 190 atgtctgacccatggagttgagatgatagagacattgaattgaggggaatgatggaggag 249
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 390 atgtctgacccatggtgttgagatgatagagacattgaattgaggggactgatggaggag 449
Query: 250 aggag 254
|||||
Sbjct: 450 aggag 454
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space: 158916
Effective search space used: 158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no134_o16.g1 MSMg01no134_o16.g1 CHROMAT_FILE:
MSMg01no134_o16.g1 PHD_FILE: MSMg01no134_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:50 2005
(743 letters)
>mm_chr16_65899925_65901067
Length = 1143
Score = 1284 bits (664), Expect = 0.0
Identities = 719/738 (97%), Gaps = 2/738 (0%)
Strand = Plus / Minus
Query: 6 aaacataatgtatcctttcatttcaggaatactgacccttgataaagctctgtagggaat 65
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 936 aaacataatgtgtcctttcatttcaggaatactgaagcttgataaagctctgtaggggat 877
Query: 66 atctcttcattggtacatcctacgatcttccccagagcatctccctcaagatctaagatc 125
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 876 atctcttcattggtacatcctacgatcttcccccgagcatctccctcaagatctaagatc 817
Query: 126 tggaataaaacttttattcgagaaagaagcagaacttcagctctgtgaactgtcaaattc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 tggaataaaacttttattcgagaaagaagcagaacttcagctctgtgaactgtcaaattc 757
Query: 186 catatgcaaggtgacgcccatctaattgattccatttaaaacagaaccacttatctcagg 245
||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 756 catatgcaaggtgactcccatctaactgattccatttaagacagaaccacttatctcagg 697
Query: 246 gaaatgaacttgaatgaaattgtaagtaggtgagaggatgaataggcatgctgtggctaa 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gaaatgaacttgaatgaaattgtaagtaggtgagaggatgaataggcatgctgtggctaa 637
Query: 306 ttgatgtgaaacataatcattttatcagacaaggaatgcacagtgaataaatatgaatcg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ttgatgtgaaacataatcattttatcagacaaggaatgcacagtgaataaatatgaatcg 577
Query: 366 ttagcgtctctcataacaattttaggcatttttacatgtttcatctgtatatattatttc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ttagcgtctctcataacaattttaggcatttttacatgtttcatctgtatatattatttc 517
Query: 426 taagggctttgagaaaaatcctaggatcacaaaaatgtcagaagaggaatgacctcaaag 485
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 taaaggctttgagaaaaatcctaggatcacaaaaatgtcagaagaggaatgacctcaaag 457
Query: 486 aacatccaattccacgttttgtcacactgtccttctcgtccagggaaagctaggtaacat 545
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aacatccaataccatgttttgtcacactgtccttctcgtccagggaaagctaggtaacat 397
Query: 546 tggactttcaggcagcatctgaagctctgcaaccttgtgcctggttctaggtataggctg 605
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 396 tggactttccttcagcatctgaagctctgcaaccttgtgccaggttctaggtataggctc 337
Query: 606 cctctcttaccttcccatcactgtctacacaagatgaggcagagcatcatgcaagcagga 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cctctcttaccttcccatcactgtctacacaagatgaggcagagcatcatgcaagcagga 277
Query: 666 ggggagtggagctcttcgccccctcgcaggcagagcacagaaaatatggttacattaata 725
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 276 ggggagtggagctcttcgccccctcacaggcagagcacagaaaatatggttacattaata 217
Query: 726 gacattttttttaatcac 743
||||||||||| |||||
Sbjct: 216 gacattttttt--atcac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 743
Length of database: 1143
Length adjustment: 10
Effective length of query: 733
Effective length of database: 1133
Effective search space: 830489
Effective search space used: 830489
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
