Query= MSMg01no135_g03.b1 MSMg01no135_g03.b1 CHROMAT_FILE:
MSMg01no135_g03.b1 PHD_FILE: MSMg01no135_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:30 2005
(663 letters)
>mm_chr16_84387867_84388929
Length = 1063
Score = 938 bits (485), Expect = 0.0
Identities = 517/529 (97%), Gaps = 3/529 (0%)
Strand = Plus / Minus
Query: 21 acattaagccaatgaacatatataagattaaaaatgaaagattctcatttaatgaagatt 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 acattaagccaatgaacatatataagattaaaaatgaaagattctcatttaatgaagatt 470
Query: 81 aaggagcataaggttttacagaaatattacatgggtgacattctcttttagggccagaaa 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 469 aaggagcataaggttttacagaaatattacatgggtgacattctcttttagggccaggaa 410
Query: 141 gctctttagtaggaggttgcaaatcagataccccttgaagataatacacttcaaaggatt 200
||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||
Sbjct: 409 gctctttagtaggaggttgtacatcagatacccctggaagataatacacttcaaaggatt 350
Query: 201 agatttgaaaatctaaatagagctcacactaagaagcttttgcttgggaaatcatgggat 260
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 349 agatttgaaaatctaaatagagctcacactaagaagctttcgcttgggaaatcatgggat 290
Query: 261 cacaaggatccagtatttacccaaaaggtcaaacttacaaactactttttggcaagtaat 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cacaaggatccagtatttacccaaaaggtcaaacttacaaactactttttggcaagtaat 230
Query: 321 taatatctaaacttttgtagtgctgggcgttgctatgagggctactgagggagaagagac 380
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 229 taatatctaaacttttgtagtgctgggcgttgctatgagggctcctgagggagaagagac 170
Query: 381 atcaatagtcctacctagtgcaaaagtctgcatactacaaaaccgaactttaggcaagtt 440
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 169 atcaatagttctacctagtgcaaaagtctgcatactacaaaaccgaacttcaggcaagtt 110
Query: 441 gtacctactgttaaaatagtagcatggtaggaaggtaacaaccacgttctgattgaattt 500
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 109 gtacctactgttaaaatagtagcatggtaggaaggtaacaaccactttctgattgaattt 50
Query: 501 gaggtcttct---tatgatctatttcgtatttggtgttataaaacttgt 546
|||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 49 gaggtcttctccttatgatctatttcgtatttggtgttataaaacttgt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_g03.g1 MSMg01no135_g03.g1 CHROMAT_FILE:
MSMg01no135_g03.g1 PHD_FILE: MSMg01no135_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:30 2005
(634 letters)
>mm_chr16_84207435_84208468
Length = 1034
Score = 1195 bits (618), Expect = 0.0
Identities = 630/634 (99%)
Strand = Plus / Plus
Query: 1 ctcttaactgtgcctgcttcagaaggaaaaatggtgagagacaggagtgaagggcaggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcttaactgtgcctgcttcagaaggaaaaatggtgagagacaggagtgaagggcaggca 260
Query: 61 gagactctgcccctgaggctttcaaagcttctccagattaaagttctcagcatgccaaga 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagactctgcccctgaggctttcgaagcttctccagattaaagttctcagcatgccaaga 320
Query: 121 cataccttattgtggagtaccatttctgaacccagcatttttcaaatctgtttgcaaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cataccttattgtggagtaccatttctgaacccagcatttttcaaatctgtttgcaaacc 380
Query: 181 ttaaagtctcacatgaagttgttgccagcatatactgcacaaaactatgagagggccatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaagtctcacatgaagttgttgccagcatatactgcacaaaactatgagagggccatt 440
Query: 241 gtatagtgactgtaatctctctgtgcccgtggcaattacttgtttgattctgttgcagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtatagtgactgtaatctctctgtgcccgtggcaattacttgtttgattctgttgcagca 500
Query: 301 gttttagtgatatgccaagtaatgcacttcatggaaagaaaggtcccagatgactcatct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttttagtgatatgccaagtaatgcacttcatggaaagaaaggtcccagatgactcatct 560
Query: 361 aagtcatttctgccaatcattcactcaccttggccaatcattccccatttttctaacaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagtcatttctgccaatcattcactcaccttggccaatcattccccatttttctaacaag 620
Query: 421 tgaaatgaaatgctgactgtagagagaacccttcactctataaaatgagtgtttgacaga 480
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 tgaaatgaaatgctgactgtagagagaacccatcactctataaaatgagtgtttgacaga 680
Query: 481 ctgtacaggagggaactgtcaaagatttcttctacatctgaagctctcttctcatttaca 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 ctgtacaggagggaactgtcaaagatttcttctacatctgaagctctcttctcattgaca 740
Query: 541 cccgttctggaatcctagactgtcctgttcccctcaaaatccactgcttcctccagcata 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 741 cccgttctggaatcctagactgtcctgttcccctcaaaatctactgcttcctccagcata 800
Query: 601 acattgatatccttgtctctctctgtcagggttt 634
||||||||||||||||||||||||||||||||||
Sbjct: 801 acattgatatccttgtctctctctgtcagggttt 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
