ATCTTTNNNNNTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTCCGCGGAATTCCACGCACCGCTGTAAACACAGCCAGGAGTGATGGAG
GGCAGAGACAAGCAGGACCATCTCAGCTCACTAACCATCTCATTTAGCTT
AACAAGGGAGAGCCAAGTACAGTGAGAACCACTTATGTCGAAAACAAAAC
AAAACAAAAACAAAAAACAATGGAAGGTGAATGAGAGGATAACTAACGTC
AAACCCTGGGCTCCACAGGCATACCTGTGTATGAGCATTCACACATGCGT
GCGAACACACGCGAGCACGCACACACACACACACACACAAATATGTACAT
GTCCCATTAGAGTGACACGATCAGATGACAGAAAACTGGACAACCAATAA
AATGATACAAAATGTATGTTTGGAGCAAACATTCACCCAATATGTCAAAG
CAGCCTTCAAAGAAAATATTGAGAAATGGAGAGAATAGATGATAGACATA
TAACCAGCCTAACATTCTAAAATTTATGCTGCAGATTTATTTTTTGCTTA
TTCACTATTTTTTATTACATTTCCAATATGACAGTATTCAAATAGCTCAG
GTCTTGCTTTTTCATTGTTTACTTGGGTTTATATTAGTTTGACATTATTG
CATGGCCCTTCCTTCAGCATTTGGCTGTAGTCT

ACTCGGANNNNCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCCTCCATTTGCT
AACCTAGGCATAGTCCTGGAAGCTTCTAGCCTCTGTACTATCTAATTGAG
GCCTAGAAATCTTTCAGCCTCTGATACTTGCTGGTGAATAAACTCACCCT
TTCCTTTCTTGTTCTTTCTGACCTCTAGCTGGCTGTTTCAACTGTTCTGG
TTCAAACTCCTCTCCTAGCTGACATCTTTAATCTGGCTTTTCTCTTGGCC
TCTGAATTGCTTTGCTTGGCCTCAAAGTAACTCTAGCCGTCTTTGCTAAC
CTTGGGCTCTTTCTTATCCTCTTGCTAGTTCTGTCTTTACCTGTGTCTAG
CTAGTTCTCTCTTCAGTCTGTCTCTGTAGAATTCTCTCAGTAGCACTGCC
TCCTTCTCTCTCCCTGGGCCACTCTTCTCTCCCTCTCAGCTCTACTGCAC
TGCTCTCCACAGACTCAACTGTATTCCTGGACTGTACTCTTTCTCCTGTG
CTGGCTATCTCTCCCTGAAGTAGCTTCTCTTTCCTAATTCTTCTTGTGAG
AGTTGAGCATATGTATCCTATTGTGTTAAATCTTTCTCTGACTCGTCACA
TTTTCTGTCACTCAGACATCATTTTTAAA

Query= MSMg01no136_g20.b1 MSMg01no136_g20.b1 CHROMAT_FILE:
MSMg01no136_g20.b1 PHD_FILE: MSMg01no136_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:48 2005
         (631 letters)



>mm_chr16_77480956_77481986
          Length = 1031

 Score =  940 bits (486), Expect = 0.0
 Identities = 534/560 (95%), Gaps = 16/560 (2%)
 Strand = Plus / Minus

                                                                        
Query: 72   cagctcactaaccatctcatttagcttaacaagggagagccaagtacagtgagaaccact 131
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1031 cagctcactaaccatctcatttagcttaacaagggagatccaagtacagtgagaaccact 972

                                                                        
Query: 132  tatgtcgaaaacaaaacaaaacaaaaacaaaaaacaatggaaggtgaatgagaggataac 191
            |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971  tatgtcaaaaaaaaaacaaaacaaaaacaaaaaacaatggaaggtgaatgagaggataac 912

                                                                        
Query: 192  taacgtcaaaccctgggctccacaggcatacctgtgtatgagcattcacacatgcgtgcg 251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 911  taacgtcaaaccctgggctccacaggcatacctgtgtatgagcattcacacatgcgtg-- 854

                                                                        
Query: 252  aacacacgcgagcacgcacacacacacacacacacaaatatgtacatgtcccattagagt 311
                          |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 853  --------------cgcacacacacacaaacacacaaatatgtacatgtcccattagagt 808

                                                                        
Query: 312  gacacgatcagatgacagaaaactggacaaccaataaaatgatacaaaatgtatgtttgg 371
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 807  gacacgatcagatgacagaaaactggacaaccaataaaatgatacaaaatgtatgtttga 748

                                                                        
Query: 372  agcaaacattcacccaatatgtcaaagcagccttcaaagaaaatattgagaaatggagag 431
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747  agtaaacattcacccaatatgtcaaagcagccttcaaagaaaatattgagaaatggagag 688

                                                                        
Query: 432  aatagatgatagacatataaccagcctaacattctaaaatttatgctgcagatttatttt 491
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 687  aatagatgatagacatataaccagcctaacattctaaaattcatgctgcagatttatttt 628

                                                                        
Query: 492  ttgcttattcactattttttattacatttccaatatgacagtattcaaatagctcaggtc 551
            ||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 627  ttgcttattcagtattttttattacatttccaatatgatggtattcaaatagctcaggtc 568

                                                                        
Query: 552  ttgctttttcattgtttacttgggtttatattagtttgacattattgcatggcccttcct 611
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567  ttgctttttcattgtttacttgggtttatattagtttgacattattgcatggcccttcct 508

                                
Query: 612  tcagcatttggctgtagtct 631
            ||||||||||||||||||||
Sbjct: 507  tcagcatttggctgtagtct 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)