BAC Information

Click to search

BAC

Clone NameMSMg01-136L01
Chromosome16 (Build37)
Map Location 25,865,104 - 25,865,347
singlet/doubletsinglet
Overlap geneTrp63
Upstream geneLpp, 5430420C16Rik
Downstream geneLOC100043571, Leprel1, Cldn1, Cldn16, LOC100043057, Il1rap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136L01.T7 (MSMg01no136_l01.b1)MSMg01-136L01.TJ (MSMg01no136_l01.g1)
ACCAG342825AG342826
length769774
length of high quality
(start - end)
253 (53 - 305)134 (82 - 215)
definitionCHROMAT_FILE: MSMg01no136_l01.b1 PHD_FILE: MSMg01no136_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:09 2005CHROMAT_FILE: MSMg01no136_l01.g1 PHD_FILE: MSMg01no136_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGTGCCTACCTGAGACAGGAGAGAAAGAAACATACATG
TCTATATACATGATGTAACATGTAACATGGCTTTTGCTCTGCCCTCCAGA
ACTCCACTTCAAATGGCATGTTTCCTTCTAGGAAGGGATATTGTAAAATC
CCCTGGAGAGCTCTCTTAGTCTTGCTTTCTAGAAAGCGTCAAACTAATGT
TTCTTTCTGTTTTGTTTGTTGTTGTTGGGATTTTTGTTTTGTTTTGTTTT
TGCTTCCCACCCCCCCCACCCTCTTTTTTTTTCTTCTCATACCCTCACCC
GAAATTATTAAATATCATATGTCCCGTACATAAAAAACACCCTTAATATT
ACTTTTTTCTTTATCTTTTATTTCGCCCATTGATCACTATTATTTTTTCT
GTATGTTTCCTTTCCTTTTTCCTCCCTTGCTGGCTCTTCCTCTTCTGTTT
CCCTTTTTTTCACCCCCGCTTTCTCGTTCCTTTTACGTCCTTTTCTCTTT
CTTCTTTTCACCTTTCTGTTCATTATCGCCCACCTTTTTGGCTCGGTACT
TGGCTGTCCCTCTTCGCTTTACTTCTCTCCTCTCCCTTGTCCATATAAGT
TAAACACTTTGCACTCCCCGCCTTTTTTTTGCCCCCCATCCCTTTTTCCC
CCTCTTTTTTTTTTATGTCCGGCAGAGTCCTCATTCCTGTGTCCGTCTCC
CTTTCCGGTTCTCTCCTCG
CCCCCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGATCTCAAATGCTGCA
GTGACTAACCAGAAGGCCATCTTATGGAAGATCTAGAGAGATTGGTAAGA
AGCTATCAACCAGTAATTTGATAACTTGGATGGATGGATGGATGGATGGA
TGGATGGATGGATGNNCCCCCCNCCCCCCCCNCCCCGCCCCCCCCCCCCC
CCCCCTCCTCCCCNCCCACCCCCCACCCNCCCCCCCCACCCCANCCCACC
CGTCCCCCTCACCCCTCTCCCACCCTTTTTTTCCCCCTTCTTTGTCCCCA
CCCCTGCTCAACTTTTTCTTTCCCCCCCCGCTCCCCACAACGCACTCCCA
TTTCGCCGGCCCTTCCGAATGCCCCCCCCCCAGTTTCTCTCTTTGCCCCA
CTTTTTCGTGCTGCTCTCTCCCCTTCTCCCCCCCCCCTCTCTTCCCCCCC
AGCTTCTCTCCTTCCTCCTTCTCTCTTCTCTCCCCTCCCATGGCCTCACG
ACCGCCCACTCCCCCCCCTCCCGCCCTCCTTTCCCTCCTTGTCCCGTACG
CCGCATCCCACCTTACCCCCTTTCTTCCCTCCTCCCTCCTCTTCTTCCCC
CCCCCCTCTTCCTCTTCCCTTCCCCCCCTTCTCTCTTTTCCCCCCTTGCC
TGTTATTCCTCTTCTCCCTTGTTTTCTCCCTGTTCTCTCTTCTTTTCTCC
TTTCTCTGCGTCCTCCCCTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_l01.b1 MSMg01no136_l01.b1 CHROMAT_FILE:
MSMg01no136_l01.b1 PHD_FILE: MSMg01no136_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:09 2005
         (253 letters)



>mm_chr16_25864953_25865605
          Length = 653

 Score =  433 bits (224), Expect = e-126
 Identities = 239/244 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtgcctacctgagacaggagagaaagaaacatacatgtctatatacatgatgt 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gaattcagtgccaacctgagacaggagagaaagaaacatacatgtctatatacatgatgt 336

                                                                       
Query: 65  aacatgtaacatggcttttgctctgccctccagaactccacttcaaatggcatgtttcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aacatgtaacatggcttttgctctgccctccagaactccacttcaaatggcatgtttcct 276

                                                                       
Query: 125 tctaggaagggatattgtaaaatcccctggagagctctcttagtcttgctttctagaaag 184
           |||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| |
Sbjct: 275 tctaggaagggatattgtaaaatcccctggagagctctcacagtcttgctttttagaagg 216

                                                                       
Query: 185 cgtcaaactaatgtttctttctgttttgtttgttgttgttgggatttttgttttgttttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 cgtcaaactaatgtttctttctgttttgtttgttgttgttgggatttttgttttgttttg 156

               
Query: 245 tttt 248
           ||||
Sbjct: 155 tttt 152


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)