Query= MSMg01no137_d04.b1 MSMg01no137_d04.b1 CHROMAT_FILE:
MSMg01no137_d04.b1 PHD_FILE: MSMg01no137_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:48 2005
(273 letters)
>mm_chr16_90430998_90431672
Length = 675
Score = 456 bits (236), Expect = e-133
Identities = 264/274 (96%), Gaps = 2/274 (0%)
Strand = Plus / Plus
Query: 2 gaattcaggggagttctcggcaaaggtcatggagttgtaagaacattgatgccgtaggcc 61
||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 202 gaattcaggggaggcctgggcaaaggtcatggagttgtaagaacattgatgctgtaggcc 261
Query: 62 aggccgtgtgcgaatggcc--agttttgctaagttaaatttgtctttgccttgtactttt 119
||||| |||| |||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 262 aggccatgtgtgaatggccagagttttgctaagttaaatttgtctttggcttgtactttt 321
Query: 120 tctcattttcttcttattaatagtatctttgtagctcaattgaggttgaattgacagcca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tctcattttcttcttattaatagtatctttgtagctcaattgaggttgaattgacagcca 381
Query: 180 cagtgtgtatgtgtttattgtgtgccgtgtggtgttttgataggtgtgggtattgtgaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 382 cagtgtgtatgtgtttattgtgtgccgtgtggtgttttgataggtgtggatattgtgaaa 441
Query: 240 tgatttccaccctcaggctcattaagattccgtc 273
||||||||||||||||||||||||||||||||||
Sbjct: 442 tgatttccaccctcaggctcattaagattccgtc 475
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 675
Length adjustment: 9
Effective length of query: 264
Effective length of database: 666
Effective search space: 175824
Effective search space used: 175824
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no137_d04.g1 MSMg01no137_d04.g1 CHROMAT_FILE:
MSMg01no137_d04.g1 PHD_FILE: MSMg01no137_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:48 2005
(631 letters)
>mm_chr16_90569779_90570810
Length = 1032
Score = 1122 bits (580), Expect = 0.0
Identities = 620/634 (97%), Gaps = 5/634 (0%)
Strand = Plus / Minus
Query: 1 tcccaaaaatggaag-aaaattgatggtggataggcaggtgcaaagatggcaggatatgt 59
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 tcccaaaaatggaagaaaaattgatggtggataggcaggtgcaaagatggcaggatatgt 773
Query: 60 gatattggaaagtaccatgaatagctaacagtgtaacttggcctgtgcatatatagatat 119
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 772 gatattggaaagtaccatgaatagctaacagtgtaacttggcctgtgcgtatatagatat 713
Query: 120 gcactgtgtaattcttttagctctactgtacttcaaatttttcacagtaaatatgaataa 179
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 712 gcactgtgtaattcttttagctctactgtacttcaaaattttcacagtaaatatgaataa 653
Query: 180 aaagatcttataaaatggctttaaaattatagttggtttttttttttgcatttttttt-a 238
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 652 aaagatcttataaaatggctttaaaattatagttgg--tttttttttgcattttttttaa 595
Query: 239 cctcagaaataacagctcaaaggaagtgtggcaggtttgtgggcagttctgtcccatctg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 cctcagaaataacagctcaaaggaagtgtggcaggtttgtgggcagttctgtcccatctg 535
Query: 299 tccattcaaaggtgccaggcctgtgggcaaggactctgttgcttccagattgtcagatca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tccattcaaaggtgccaggcctgtgggcaaggactctgttgcttccagattgtcagatca 475
Query: 359 ttgctccatcattctctaggctcaaaggtcttgttcttgtctagaaccaaacttggacca 418
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||
Sbjct: 474 ttgctccatcattctctaggctcaaaggccttgttcttgtctagaaccaaaattgggcca 415
Query: 419 ttgtcttttgattgacagatgggcatcatgaagactgggaaactgtccttctcagtaccg 478
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 414 ttgtcttttgattgacagatgggcatcatgaagactgggaaactgtccttcccagtaccg 355
Query: 479 gggctttctggctcactgaatgttcaacagctctccatttgaag-cttgcaggacagagt 537
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 354 gggctttctggctcactgaatgttcaacagctctccatttgaagtcttgcaggacagagt 295
Query: 538 gaacttcctgtgttgtgtaagctggatttccctgcatctgtgtatgagagcttattttca 597
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 294 gaacttcctgtgttgtgtaagctggatgtccctgcatctgtatatgagagcttattttca 235
Query: 598 gtaggctgaaatgaaacagaaatatgatacagaa 631
||||||||||||||| ||||||||||||||||||
Sbjct: 234 gtaggctgaaatgaaccagaaatatgatacagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1032
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1022
Effective search space: 634662
Effective search space used: 634662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
